ID KC261976; SV 1; linear; genomic RNA; STD; VRL; 3020 BP. XX AC KC261976; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-18 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-3020 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-3020 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 4c08b2887a4d79da41f3d5df4a63b581. DR EuropePMC; PMC3656965; 23696821. XX CC GenBank Accession Numbers KC261974-KC261976 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-18. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3020 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="Chrysanthemum" FT /isolate="TSWV-18" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Oct-2010" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:R9RVE5" FT /protein_id="AGM53710.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLLCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHPLPIRKCRTPFELSMMVSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNSELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSEIKKKESKI FT SEAYASGSK" FT gene complement(2093..2869) FT /gene="N" FT CDS complement(2093..2869) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:F4ZD19" FT /db_xref="InterPro:IPR002517" FT /db_xref="PDB:5IP1" FT /db_xref="PDB:5IP2" FT /db_xref="PDB:5IP3" FT /db_xref="UniProtKB/TrEMBL:F4ZD19" FT /protein_id="AGM53711.1" FT /translation="MSKVKLTKENIVALLTQGKDLEFEENQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 3020 BP; 982 A; 549 C; 461 G; 1028 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagcaaat cacaaaactg 60 taataagaac acaataccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gcagttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaact cagctgtatt ctgattcaag 240 aagcaaaagc agctttggct atactgcaaa ggtagggaat cttctctgcg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcaactc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaggacataa ttcctaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gtactatccc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gcttatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagagttcca aaggttttga agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatccgctc ccaatccgta aatgtagaac 1020 tccttttgaa ttatcaatga tggtttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actctgagct 1200 aactccagga aagttagacc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttagac agcatccaaa tcccttcctg gaaaatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcgaa atctttgtta aagcttgatt taagcgagat 1440 caaaaagaaa gaatctaaga tttcagaagc atatgcttca ggatcaaaat aatcttgctg 1500 tgtccagctt tttctaatta tgttatgttt gtttctttct ttacttataa ttatttttct 1560 gttttgtcat ttcttttgaa tttctcctgt ttaatagaaa ctataaaaca aaaataaaaa 1620 taaaaataaa ataaaaatca aaatgaaaca gaaatcaaaa aatgaaacaa aaatcaaaaa 1680 ataaaataaa aacaacaaaa aaattaaaaa acaaaaaacc acaaaaaaat taaaaattaa 1740 aaaacaaaaa accaaaaaag atcccgaaag ggacaatttt ggccaaattt gggttttgtt 1800 tttgtttttt gtttttttgt tttttgtttt ttatttttat ttttatttta ttttatttat 1860 tttattttat ttttattttt attttttatt ttttattttt tattttttat ttttatttta 1920 tgtttttgtt gtttttgtta ttttgtttat ttattaagca caacacacag aaagcaaact 1980 ttaattaaac acacttattt taaatttaac acactaagca agcacaaaca ataaagataa 2040 agaaagcttt atatatttat aggttctttt ataatttaac ttacagctgc ttttaagcaa 2100 gttctgcaag ttttgcctgt tttttaaccc cgaacatctc atagaacttg ttaagagttt 2160 cactgtaatg ttccatagca acacttcctt tagcattagg attgctggaa ctaagtatag 2220 cagcatactc tttccctttc ttaacctgat cttcattcat ttcaaatgct ttgcttttca 2280 gcacagtgca aactttccct aaggcttcct ttgtgtcata cttctttgga tcgatcccga 2340 ggtctttgta ttttgcatcc tgatatatag ccaagacaac actgatcatt tcaaagctat 2400 caactgaagc aataagaggt aagctacctc ccagcattat ggcaagcctc acagacttcg 2460 catcatcaag aggtaatcca taagcttgaa tcaaagggtg agaagcaatc ttagatttga 2520 tagtattgag attctcagaa tttccagttt cctcgacaag cctgaccctg attaagctat 2580 caagccttct gaaggtcatg tcagtggctc caatcctgtc tgaagttttc tttatggtaa 2640 ttttaccaaa agtaaaatca ctttgcttaa tgaccttcat tatactctga cgattcttca 2700 gaaatgtcag acatgaaata atgctcatct tcttgatctg gtcaaggttt tctagacaaa 2760 aagtcttgaa gttgaatgct accagattct gattttcctc aaattcaagg tctttgcctt 2820 gtgtcaacaa agcaacaatg ttttccttag tgagcttaac cttagacatg atgatcgtag 2880 aagttgttat atgctttgac cgtatttaac tcgaggtgca aaagtacaac tctgtattcc 2940 gcagtcgttt cttagggttt taatgtgatg atttgtaagg ctgagtttta aggtttgaat 3000 aaaattgaca caattgctct 3020 //