ID KC706589; SV 1; circular; genomic DNA; STD; VRL; 2560 BP. XX AC KC706589; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato common mosaic virus isolate BR:Pda9:05 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2560 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2560 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 37ba67ea3ad8986a86c69036247e3213. DR EuropePMC; PMC5420152; 28476106. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2560 FT /organism="Tomato common mosaic virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda9:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:536084" FT CDS 153..908 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QJK1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QJK1" FT /protein_id="AGH29855.1" FT /translation="MPKRDAPWRHMAPSTKVSRSANFSPRSGTGPGPSKAAEWVNRPMY FT RKPRIYRTMRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(905..1303) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QWQ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QWQ1" FT /protein_id="AGH29856.1" FT /translation="MDSRTGERITVRQAENGVYIWELTNPLYFKMSQVEDIRYTMTRVY FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGMTYLNRFKYLVLLYIDQLGVISVNN FT VVRAVRFATDRSYVNAVLENHSIKFKFY" FT CDS complement(1050..1436) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:M4QNG5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M4QNG5" FT /protein_id="AGH29858.1" FT /translation="MLNSSSSTPPSIKLRHRIAKRAPRRRRIDLNCGCSLYVNLNCSNY FT GFTHRGTHHCASGREWRLYMGANKSPLFQDVPSRGHPVHHDQSVPCPNTVQPQPEESIG FT SPQGISQLPSLDDIPDSFWDDLLK" FT CDS complement(1360..2427) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QLZ6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QLZ6" FT /protein_id="AGH29857.1" FT /translation="MPRNPNIFRLTAKNIFLTYPQCDIPKDEALQMLQSLPWSVVKPTY FT IRVAREEHSDGFPHLHCLVQLSGKSNIKDVRFFDLTHPRRSAGFHPNVQAAKDTNAVKN FT YITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASPGEALDIIRAGDPKTFLVNYHNV FT KANLERIFQKAPAPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPIRPISIVIEGNS FT RTGKTMWARALGPHNYLSGHLDFNSRVYSNDVLYNVIDDVSPHYLKLKHWKELIGAQID FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLAKQENASLKSWTLHNAKFIILNSP FT LYQTTTQDCEESTST" FT CDS complement(1938..2207) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="UniProtKB/TrEMBL:M4QJT2" FT /protein_id="AGH29854.1" FT /translation="MLGFSTSLTPDGLPDFTQMFRQPKTPMQSRITSPKKVIIVNPDST FT RCLGEQRQIKTTCTTTPSMQLLRERLSTLSGPETPRLSSSTITM" XX SQ Sequence 2560 BP; 669 A; 556 C; 617 G; 718 T; 0 other; actggatggc cgcgcaaaaa tttggacttg ggccgctttt tatggcccaa ttagaacagg 60 cctgacgagc ttagatattt gtaacaactt agagcccaag ttgtataacg gctataaatt 120 gaatgtctat gttatatgaa ctttaattcg aaatgcctaa gcgcgatgcc ccatggcgcc 180 acatggcacc ttcgacgaag gttagccgtt cagctaattt ctcccctcgt tcgggaactg 240 ggcctgggcc tagcaaagcc gctgaatggg tcaaccggcc catgtacagg aagcccagga 300 tatacagaac tatgagaacg cccgacgttc ctagaggatg tgaaggccca tgtaaggtcc 360 agtcctatga gcaacgccac gatatttccc atactgggaa ggtgatgtgc atatcagacg 420 tcacacgtgg caatggaatt acccaccgag tcggtaagcg tttctgcgtt aagtctgtgt 480 acattttagg gaagatatgg atggacgaga acatcaagtt gaaaaaccat acgaacagtg 540 ctatgttctg gttggtcagg gacagaagac cgtatggtac cccgatggat tttggccaag 600 tgttcaacat gtttgacaac gagcccagca ctgcaaccgt gaagaacgac ctacgtgatc 660 gtttccaggt tatgcatagg ttctatgcta aggtcacggg tggacaatat gccagcaatg 720 agcaggcgct ggtcaagcga ttctggaggg tcaacaatca tgtggtctac aaccatcaag 780 aagccgggaa gtatgagaat cacacagaga acgccctgtt attgtatatg gcatgtactc 840 atgcctctaa ccctgtatat gcaaccttaa aaattcggat ctacttttat gattcgataa 900 caaattaata aaatttaaat tttattgaat gattttcaag tacagcattt acatatgacc 960 tgtctgttgc aaatcgaaca gctctaacta cattattaac tgaaatgact cctaactgat 1020 caatatacaa cagtactaaa tatttaaatc tatttaagta agtcatccca gaagctgtca 1080 gggatgtcgt ccagacttgg aagttgagaa atgccttgtg gagacccaat gctctcctca 1140 ggttgtggtt gaaccgtatt tggacatggt acactctggt catggtgtac cggatgtcct 1200 ctacttggga catcttgaaa taaaggggat ttgttagctc ccatatatag acgccattct 1260 ctgcctgacg cacagtgatg cgttcccctg tgcgtgaatc catagttact gcaattgagg 1320 ttgacgtaca aagagcagcc acagttcagg tctatccttc tacgtcgagg tgctctcttc 1380 gcaatcctgt gtcgtagttt gatagagggg ggagttgagg atgatgaatt tagcattatg 1440 gagtgtccac gacttgagag atgcgttttc ctgtttggct aggaaatctt tatagctggc 1500 cccctctcca ggattgcaga gcacgattga tgggatacct cctttaattt gaactggctt 1560 tccgtactta caatttgatt gccaatctat ttgggcccca atcaattctt tccagtgctt 1620 taactttaag taatgcggag agacgtcatc aatgacgtta tatagcacat catttgagta 1680 aaccctagaa ttgaaatcca ggtgtccact tagataatta tgtgggccaa gtgcacgcgc 1740 ccacatcgtc ttccccgtcc gactattacc ctcgatgaca atactgatag gtctgatagg 1800 ccgcgcagcg gcatctctac caaaataatc atcagcccac tcttgcatct cgtcgggcac 1860 gttagtgaat gaggagaggg gaaacggagg aacccacggt gccggagcct tttggaagat 1920 cctctctaga ttagccttca cattgtgata gttgacgagg aaagtcttgg ggtctccggc 1980 cctgataatg tcgagagcct ctcccggaga agctgcattg acggcgttgt ggtacacgtc 2040 gtctttattt gcctttgttc ccccagacac cttgtactgt ccggattcac aataatcacc 2100 ttctttggtg atgtaattct tgactgcatt ggtgtctttg gctgcctgaa catttgggtg 2160 aaatccggca gaccgtctgg ggtgagtgag gtcgaaaaac ctaacatcct tgatattcga 2220 ttttccggag agttggacaa gacagtgaag gtgggggaac ccgtcggagt gttcctctct 2280 ggcgactcgt atatatgtgg gtttgacgac tgaccatgga agagattgaa gcatttgaag 2340 agcttcatct tttggtatat cgcactgtgg atatgtgaga aatatgtttt tcgccgttaa 2400 tctgaatata ttagggtttc gtggcatttt tgtaaatata ggtgaggaca ccagggattg 2460 ctctcaactt ctgtgctatt tgctggtgtc ctggtgtccc atttatacta gaactctcta 2520 gggtaatctc aggggcaaaa gcggccatcc atataatatt 2560 //