ID KC706605; SV 1; circular; genomic DNA; STD; VRL; 2644 BP. XX AC KC706605; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato leaf distortion virus isolate BR:Pda47:05 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf distortion virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2644 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2644 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; de1f97744df96ee417cf810d0c735ad1. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2644 FT /organism="Tomato leaf distortion virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Pda47:05" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2005" FT /db_xref="taxon:536085" FT CDS 227..982 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:B3GN96" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3GN96" FT /protein_id="AGH29890.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(979..1377) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QWS5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QWS5" FT /protein_id="AGH29891.1" FT /translation="MDSRTGELITAHQAENGVYIWEITNPLYFKMLRVEDIPFTRTRVY FT HIQIRFNHNLRKALGLHKAFLNFQVWTTSMRASGMTYLSRFRHLVMMYLEQLGVIALNN FT VIRAVRFATDKSYVNHVLENHSIKFKFY" FT CDS complement(1124..1513) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:B3GN98" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B3GN98" FT /protein_id="AGH29893.1" FT /translation="MLNSSSSTPPSIKQQHRIAKKRAIRRRRIDIECGCSIYVHINCIG FT HGFTHRGTHHCTSGREWRLYLGDNKSPVFQDAPSRRHPVHKDQSVSHPDTVQPQPQESV FT GSPQGIPELPSLDDIDESFWDDLFK" FT CDS complement(1425..2510) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:M4QM40" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M4QM40" FT /protein_id="AGH29892.1" FT /translation="MPPPKRFKISSKNYFVTYPHCSLTKEEALAQLKLLNTPTNKKYIK FT ICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQVDGRSARGGQQTSNDAAAEALNASSKEEAMMIIKEKLPEKFLFQYH FT NLSSNLDRIFKKAPDPWVPPFPLSSFTNVPDEMQEWADEYFGRGAAARPVRPMSIIVEG FT DSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVEYNVIDDVTPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKSWTLYNAKFIFLD FT SPLYQTATQDCEEESNPAATD" FT CDS complement(2096..2359) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3GNA0" FT /protein_id="AGH29889.1" FT /translation="MRMGNLIYTCLYSSKGNTSAQITDSSTWYPHPGQHISIRTFRELN FT HRPTSSPTSIRTVILSNGENSKSTAEVLEEVSKRLTTLQLRR" XX SQ Sequence 2644 BP; 654 A; 590 C; 628 G; 772 T; 0 other; accggatggc cgcgcgattt tttgcccccc cacgtggcgc tcttgttgcc gctggatctt 60 tctcgcccgc gcgctgtact ctttaattct aattaaaggt ataacttttg tttcgaccaa 120 tgatagtgcg cctgggaagc ctagatatgt gcgcgatact tggggccgaa gttgttgatc 180 aacggctata aattaaaaga agactgacca cagtctttaa ttcataatgc ctaagcggga 240 tgccccgtgg cgcctgatgg cgggaacttc gaaggttagc cgctcttcca atttctcccc 300 ccgtggaggt ggaggcccaa agttcaacaa ggcctcggaa tgggttaaca ggcccatgta 360 caggaagccc aggatatatc gtacgctgag aacgcctgat gtccctagag gctgtgaagg 420 gccctgtaag gtccagtcct acgagcagcg tcacgacatc tcacatgtcg gtaaggtgat 480 gtgcatttct gatgtgacac gtggtaatgg tattacccac cgtgtcggta agcgtttctg 540 cgttaagtct gtgtacattt taggtaagat atggatggac gagaacatca agctgaagaa 600 ccacacgaat agtgtcatgt tctggttggt cagagatcgt agaccgtatg gtactcctat 660 ggactttggc caggtgttca atatgtttga caacgagccc agcactgcta cggtgaagaa 720 cgatctccgt gatcgttatc aagttatgca caagttctac gccaaggtca ctggtggtca 780 atatgccagc aatgaacagg ctctggtcaa gaggttctgg aaggtcaaca atcatgtggt 840 gtacaaccac caggaagctg gcaagtatga gaatcacacg gagaatgctt tgttactgta 900 tatggcatgt actcatgcct ctaaccctgt gtatgcaacg ctaaagattc gaatctattt 960 ttacgattcg atcaccaatt aataaaattt gaattttatt gaatgatttt ctagtacatg 1020 atttacatat gatttgtctg ttgcgaatcg aacagctcta attacattat taagtgcaat 1080 tacacctaat tgttctaagt acatcattac taagtgccta aacctactta aataagtcat 1140 cccagaagct ctcatcgatg tcgtccagac ttggaagttc aggaatgcct tgtggagacc 1200 caacgctttc ctgaggttgt ggttgaaccg tatctggatg tgatacactc tggtccttgt 1260 gaacgggatg tcttctactc ggagcatctt gaaatacagg ggatttgtta tctcccagat 1320 atagacgcca ttctctgcct gatgtgcagt gatgagttcc ccggtgcgtg aatccatgac 1380 ctatgcagtt tatatggacg tatatggagc agccgcactc gatatcaatc cgtcgccgcc 1440 ggattgctct cttcttcgca atcctgtgtt gctgtttgat agagggggga gtcgaggaag 1500 atgaatttag cattgtataa tgtccacgac ttcagggatg cattttcctc tttctccagg 1560 aaatctttat agctggcccc ctcgccagga ttgcagagca cgattgaagg aattccacct 1620 ttaatttgaa ctggcttgcc gtacttacaa tttgactgcc agtctttttg agcaccaatc 1680 aattccttcc agtgctttaa ctttaaataa tgcggggtga catcatcgat gacgttatac 1740 tcaacatcat ttgagtaaac cctagaattg aagtccaggt gtccactcag ataattgtga 1800 gaccccaaag ctctggccca catcgtcttc cccgttcgac tatcaccttc gacgattata 1860 ctcatgggtc tcactggccg cgcagcggca cctcttccaa aatactcatc ggcccattcc 1920 tgcatctcgt caggaacgtt agtgaaggag gagaggggaa acggaggaac ccaaggatcc 1980 ggagcctttt tgaatattct atccaggtta ctggataggt tatggtattg gaagaggaat 2040 ttttccggca gcttttcttt gataatcatc atcgcctctt cctttgatga tgcattcaac 2100 gcctcagctg cagcgtcgtt agacgtttgc tgacctcctc tagcacttct gccgtcgact 2160 tggaattctc cccattcgat agtatcaccg tccttatcga tgtaggactt gacgtcggac 2220 gatgatttag ctccctgaat gttcggatgg aaatgtgctg acctggatgg ggataccaag 2280 tcgaagaatc tgttatttgt gcactggtat ttcccttcga actgtataag cacgtgtaga 2340 tgaggttccc cattctcatg cagttctctg cagattttga tatacttctt gttggttggg 2400 gtgttaagga gtttaagttg ggcaagtgct tcttctttgg tcagagaaca atgagggtat 2460 gtgacaaaat agttttttga agatatttta aaccgctttg ggggtggcat atttgtaaat 2520 atagccttgt accccaattg ctccggctct caaaactcta tatgaattgg ggtaatgggg 2580 tacaatatat agtaaggagt tccataagct cctaggggca cgtggcggcc atccgtataa 2640 tatt 2644 //