ID KC709510; SV 1; linear; genomic RNA; STD; VRL; 8242 BP. XX AC KC709510; XX DT 17-JUN-2013 (Rel. 117, Created) DT 24-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Tomato chlorosis virus isolate SDSG segment RNA2, complete sequence. XX KW . XX OS Tomato chlorosis virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8242 RA Zhu X., Li G., Zhao L.; RT "Nucleotide sequence analysis and detection of a China isolate of Tomato RT chlorosis virus"; RL Unpublished. XX RN [2] RP 1-8242 RA Zhu X., Li G., Zhao L.; RT ; RL Submitted (02-MAR-2013) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX DR MD5; cadac6d6286dd9ff040653d25198fdf5. XX CC GenBank Accession Numbers KC709509, KC709510 represent the complete CC genome of Tomato chlorosis virus isolate SDSG. XX FH Key Location/Qualifiers FH FT source 1..8242 FT /organism="Tomato chlorosis virus" FT /segment="RNA2" FT /host="tomato" FT /isolate="SDSG" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Oct-2012" FT /db_xref="taxon:67754" FT 5'UTR 1..238 FT CDS 239..340 FT /codon_start=1 FT /product="p4" FT /note="small hydrophobic protein; ORF1" FT /db_xref="GOA:R9W167" FT /db_xref="UniProtKB/TrEMBL:R9W167" FT /protein_id="AGN91004.1" FT /translation="MPTAGMLQPLLHFVIVYVMVSPIPLYSFFVKFK" FT CDS 733..2397 FT /codon_start=1 FT /product="Hsp70" FT /note="heat shock protein 70-like protein; ORF2" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:D5MRD4" FT /protein_id="AGN91005.1" FT /translation="MSIKAGLDFGTTFSTISCFYNNKLFSLKLNGTEYIPTCLSITPNN FT EVIVGGPSQVLEASETPSCYFYDLKRWVGVTSVNYEVVKAKINPMYKTRLSNNKVYITG FT INKGFSTEFSVEQLILHYVNTLVRLFSKTENLKITDLNVSVPADYKSGQRLFMQAVCSS FT LGFNLRRIVNEPSAAAIYCVSKYPQYAYFYIYDFGGGTFDTSLIVRYGKFVTVADTQGD FT SFLGGRDIDKAISKFIMDKNALNAPLSADMLASIKEETNSTGRSSYNIISDDGSIINIQ FT FTFDDLVKCVEPFTRRSFSILRSLVSRNKTSNGALFLVGGSSLLRPIQNRADGFARNHG FT LALIIDPDLRAAVSFGCSMLHAQEDSGNMTYIDCNSHPLMDLGLYCHPRIIIRKPMSVP FT YTHKIEREVTRFITTALNVYEGSDLFVLNNDWLISADVDYSKYAKMGETLVSVYKYTID FT GILELSMANKTTGKSWVLPNTFARSEKIVISDLTLTQLSNVDELATIVSILSYFDATFN FT YLISMFNTPSIFEREVGKISDAKGLYNRLVEQNRNFS" FT CDS 2407..2610 FT /codon_start=1 FT /product="p8" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:R9W2T0" FT /protein_id="AGN91006.1" FT /translation="MLVCLVLRTNCLVKVLYFSDTPIVESGPLVIRSSDPTIIEDLLEC FT LPFVTESWNPLILPKESKDFSQ" FT CDS 2562..4115 FT /codon_start=1 FT /product="p59" FT /note="putative movement protein; ORF4" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:R9VYX5" FT /protein_id="AGN91007.1" FT /translation="MEPVDTSERVKRLFSVVFKKSNNDEKIHKLADYLLKYYSTENRNL FT YRTTVNNKAFSFTSTYSVSGGKVYLDTKEPWQVVKLIIIYLYKVEPGYLKKTNYSPENL FT FARLRFDDYYDEWNKYFDKDVNDYLADHPEEGCLYTMNDIMKEYPGEEPTAQLTLYRVC FT NSLGKKISVRELKEGKISAFKIESKTDNAEIGEGVGGNALFKECVETLQSYLLLNSSKA FT GREKIRANAKIFECYLSSLVPKGLDKKLAANPLVVAKFVNAFTIRTVNSKGFGDNFKAV FT KELSPELLSFIKRVFLVDARLNEDVLFIALPKNSVVEILGDKFAVGEYLKVQNVLPASS FT NSSSLPPDIDKCVSDALVTFMRTFGNFQPAFILDIWLFVFGKMTTNSKLWREDNEILVT FT VGDVVVKSTTSRLLSHVKNCVRRDFPQFSTDNIIRQWANLRGDRAKQMFQLMNFRPGLF FT SSIPGIKPYMRFDFFKMLDLSKCTREEIESYQTLRRVTESRSNKTACDDRCLESWILRK FT " FT CDS 4097..4333 FT /codon_start=1 FT /product="p9" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:R9W3H1" FT /protein_id="AGN91008.1" FT /translation="MDLEEMIKELGLAKVERFLTVYNQGRFVAFGNIEILLCLINQHFV FT EFNPQRAKLDIELSEVRDFLRCFESFRSFGLRK" FT CDS 4333..5106 FT /codon_start=1 FT /product="coat protein" FT /note="ORF6" FT /db_xref="GOA:M4Q8W1" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:M4Q8W1" FT /protein_id="AGN91009.1" FT /translation="MENSAVANTGDNGGDRNPLVRPLDDGVDDEVQNLGRRDDSTSLIP FT ANPNRSSSWALLNPDTINYNELRKLKVHSTRGDTLTLTQEEEFEKILESFCRRIIGETP FT MTDKIFAGFYMSMCQAIVNQGTSVKAAGNNSLENYFEVDGARFKWKTPDLINEVRPKMS FT DVPNAIRRYARSHEKIIQDFINSGLIKPDYHLQFKHGVLPSHVFGTGDYINGSLMNISD FT DQLISNLLMKRNALCKGNEGKELYNVNQLASITGC" FT CDS 5112..7121 FT /codon_start=1 FT /product="minor coat protein" FT /function="encapsidates virion tails" FT /note="ORF7" FT /db_xref="GOA:R9VZJ2" FT /db_xref="UniProtKB/TrEMBL:R9VZJ2" FT /protein_id="AGN91010.1" FT /translation="MDENEIYEDQEDLSARGGGGFYYQTVTLGSGDVFPVDLALTRSAE FT FDSTIFSLYIRFVIKEGNVRLKIDFGNNWDVTMQQVRLSGWFAAFGKIEKPRTARSGWS FT YPIKLFKEAGEVIVSISGWRCYKIYNGYPVDRVDLVLAVPVREVTADLKRPLVGDYVNF FT HDVFTLIKSKNSDITLPNPSLIFNDSTSKVNLDVSPGARKQIAQVKAEKDLNIKNPEDS FT KPDVPNDLLSEVEYHNHSDVSSVFRLYYTWRVERDFERSVESRIFFPNIFPTDFTILQQ FT MWYGTTAGNVETFVEIGKNERKFNVGVAAWKDNAFGHFKLDGPTLAKISTIPGRFVDHK FT IEKDSKGHLIVSIDNTVLVRTNKVIVKPSIQIGWEFHLPWDAIGKYGVGNLARFTDIIK FT PNYIKYDGSEVPLVQTNTIESDRSKSGHKLSLVNLKSFKRISSTADFFFEPPPPSESDD FT KTWEDKIQTEVDIKKEETIPTNEGTSSSDLPSEKSQFVAANHYLLSIAEDRNIFKAAVD FT RYTGLGFSKDQAVLIIYQLGVTFGTSRNCCSDNSSFLVWKTDTGAQVIIRKGAHSRFLN FT SLVKYPCNVERLILRRRSAEILALLRNKKLAYPDRLAKKKGVSQGFTYMACDFLDYTAV FT TLTQEEQLTMNSVVQYVRLHNKHRRSIVSTSQLF" FT CDS 7125..7823 FT /codon_start=1 FT /product="p27" FT /note="ORF8" FT /db_xref="UniProtKB/TrEMBL:R9W2T4" FT /protein_id="AGN91011.1" FT /translation="MEVVYNSDDVNSGVGSGEDVNTTVAKNFYSITHVMSNYRNYTPDE FT IKDAVNIGYGLLNLCERLDRDVILVSPNSPVYNNYRDAGIPHNLLMENTARYFPVVNPS FT ELGKVLLGHISVLKFLEYFTRYGVDDMLITRLFSNFVLWSTGDLNAALYSIYQQDFHFP FT VEVRANFNFLFLNSSEIDRRLSNIRRKGYPNSENFNWFKNMISNYLYFDFVFRYSGTKI FT NIERISNYYI" FT CDS 7832..8029 FT /codon_start=1 FT /product="p7" FT /note="ORF9" FT /db_xref="GOA:Q4KRY7" FT /db_xref="UniProtKB/TrEMBL:Q4KRY7" FT /protein_id="AGN91012.1" FT /translation="MISTYFTLIGLIFLVVFCFVLLCYFVFTVIKFFAKDKISDDDCPY FT VNNVAPFGSNRFNSQPPIVR" FT 3'UTR 8030..8242 XX SQ Sequence 8242 BP; 2395 A; 1429 C; 1817 G; 2601 T; 0 other; gaaatactag tccaggtgtt tcctgtgggt acgcgatgag cctcccccac gttaattacc 60 ccaccgtcac taggtggacg tgattgtggg cgctgccggc ttcggtcgtc ggtgtctgct 120 ttcattttct agtgacgcta tgttgattaa tattaacata taacaaaaca aaacaaaaag 180 aaaataaaat agcaggccga gtaccataaa cttaactgaa ctgctcgagt ttttgcacat 240 gcctacggct ggtatgttgc agcccctctt gcactttgtt atagtgtatg ttatggtctc 300 gcctataccc ctttactctt tctttgtgaa atttaaatga ccaaatagtg agtttgtacg 360 atcaaattac tataaaccgg aaagttcaga gttactctgc actttcgaag tcggcaagtt 420 ggtaccgaca gttgatccat acgaattcac tattgacgtt atttagaaac gtgttttcgt 480 gctttactat ttgtaataat aaatgttaaa ggttgagtgg ttgtgcgttt atgtggtcag 540 atggaaactt tcttattaac ttacacatgt taatggttta gtcttcctct cgcgtattta 600 gaatcattca gtctagtaca acagtttcat tgtattgtcg acaataatta gcggtccagt 660 taactcagtt taacttgatt ccgtttgttt ttccgattct tttatttgaa ctgtattctt 720 gtcttttgta ttatgagtat taaagctggt ttggattttg gtactacatt cagtactatt 780 agttgtttct ataataacaa attgttttca ttaaaactca atgggaccga gtacattcca 840 acttgtctct ccataactcc aaataatgag gtgatagtcg ggggcccttc tcaagtttta 900 gaagcttccg aaactccgtc ctgttatttc tatgatttga aaagatgggt tggtgtcact 960 tcggtcaatt atgaggtcgt gaaagcgaag ataaacccaa tgtataaaac gcgtttatct 1020 aataataaag tgtatataac tggtatcaat aaaggtttct cgaccgagtt ttcggttgag 1080 caacttatat tacattatgt taatacttta gttcgattat tctcaaaaac agaaaactta 1140 aaaataaccg atctcaatgt gtctgttccg gctgattaca agtctgggca gagacttttc 1200 atgcaggcag tttgttcctc tttgggtttc aatttacgtc gcatagtcaa tgaaccgtcg 1260 gctgccgcta tttactgcgt ttctaaatat ccgcagtatg cttatttcta tatttacgat 1320 tttggtggcg gtactttcga cacttcttta atagtgcgat atggtaagtt tgtcactgtt 1380 gctgataccc agggagattc gtttcttggt gggcgagata tagataaagc catatcgaaa 1440 ttcataatgg ataaaaatgc tttgaacgcc ccactgtcgg cagatatgtt agcgtctata 1500 aaggaagaga caaattctac cgggcgcagt tcatacaata taataagtga tgatgggagt 1560 ataatcaata ttcagtttac gtttgacgat ttggtcaagt gcgttgaacc atttactaga 1620 cgcagttttt caatacttcg aagtctcgtt tctcgtaaca aaacttcgaa tggagcgctg 1680 tttcttgtcg gtggttcctc attgcttaga ccgattcaga atagagcaga tggttttgcg 1740 cgtaatcatg ggttagctct cattatagac ccagatctca gagctgctgt gtcatttggt 1800 tgttcaatgc tccatgcaca agaggattct gggaatatga catatataga ctgcaattca 1860 catccgttga tggatttggg tttatattgt catcctagga ttatcatcag aaaacccatg 1920 tctgttccgt acacacacaa gatcgagagg gaggtcacaa gatttatcac cactgctctc 1980 aatgtttatg aagggtctga ccttttcgta cttaacaacg attggttaat cagcgcagat 2040 gttgactatt caaagtacgc taaaatgggt gagacattag ttagtgttta taagtacacc 2100 attgacggca ttttggaact gtcgatggct aataaaacca ctggcaagtc gtgggtcctt 2160 ccgaacacct ttgccaggtc cgaaaagata gtcattagtg atttaacctt gactcaattg 2220 tcgaatgtcg atgaattggc cactatagtg tcaattttga gttattttga tgcaacattc 2280 aactatctta tttccatgtt caacactccg tcgatttttg agcgagaagt tggaaagata 2340 tctgacgcca aaggtcttta taaccgactc gttgaacaaa acagaaattt ctcttgaagg 2400 tttgttatgt tagtttgttt agtactgaga actaactgtc ttgttaaagt cttgtatttc 2460 tctgatactc caattgtcga gtccggccca ttagtaataa gaagctcgga tccgaccatt 2520 atagaagacc ttctagagtg tttacctttc gtcactgagt catggaaccc gttgatactt 2580 ccgaaagagt caaaagactt ttctcagtag tgttcaagaa atcgaacaac gatgagaaga 2640 ttcataaatt ggctgattac ctcttgaaat attattcaac ggaaaacaga aatttgtata 2700 ggacgaccgt taacaataaa gctttctctt ttacttctac atattcggtc tctggtggta 2760 aagtttatct cgacaccaag gaaccttggc aggttgtgaa actgatcatc atatatttgt 2820 acaaggtaga gcctggttat ctcaagaaaa ctaactactc tcccgaaaat cttttcgcta 2880 gattgaggtt cgatgattat tacgatgagt ggaataagta ttttgacaag gatgtcaacg 2940 attatcttgc cgaccatcct gaagagggat gtttgtacac catgaacgac attatgaagg 3000 aatatccggg tgaagaaccg actgcacaac tgactctgta cagggtttgt aactcacttg 3060 gaaaaaagat atcggttcga gaacttaagg agggaaagat tagtgctttt aaaattgagt 3120 caaaaactga taacgctgaa attggagaag gcgttggtgg taatgctctg ttcaaagagt 3180 gtgttgagac tttgcagagt tatttgctct tgaattcttc caaagcgggg cgggagaaga 3240 tccgcgctaa tgctaagatt tttgagtgct atttgtcgag tctggttcca aaaggtctag 3300 ataagaaatt agcggcgaat ccattggttg tggctaaatt cgtcaatgcg tttacgatcc 3360 ggactgtgaa cagcaaggga tttggtgaca attttaaggc cgtgaaggaa ctgtctcctg 3420 aacttttgag tttcatcaag agagtgtttt tggttgacgc caggcttaat gaagatgtgt 3480 tgtttatagc acttccgaag aactctgtag ttgagattct tggtgacaaa tttgctgtcg 3540 gtgaatattt aaaagtgcaa aatgttttgc ctgcttcgag caactcgagt agcctcccac 3600 cagatatcga taagtgcgtg tctgatgcct tggttacttt tatgcggacg ttcggtaatt 3660 ttcaaccggc cttcatacta gacatttggt tattcgtgtt tgggaagatg accaccaatt 3720 ccaaactttg gagagaggat aatgagattc tagtgacggt gggggacgta gttgtgaaat 3780 cgactaccag taggttattg tcacatgtga aaaactgtgt cagacgggac tttccccagt 3840 tctcgaccga caatataatc agacagtggg ctaatttgag gggtgacaga gcgaagcaaa 3900 tgtttcaatt gatgaacttc agacccggtt tgttttcgag tataccgggt atcaaaccgt 3960 atatgcgctt cgacttcttt aagatgttag atttgtcgaa atgtactcgt gaagaaattg 4020 aaagttatca aacattacgt cgggtgacgg aaagtaggtc caataagact gcttgtgacg 4080 ataggtgttt ggagtcatgg atcttgagga aatgatcaaa gagttaggtc tggctaaagt 4140 tgagagattt ctcactgtct ataatcaagg taggtttgta gctttcggaa atatagaaat 4200 tctactctgc ctgattaatc aacattttgt ggagtttaat cctcaaagag ctaaactgga 4260 cattgaattg tctgaagtga gagatttctt gaggtgtttt gaatctttta gaagctttgg 4320 tttaaggaaa taatggagaa cagtgctgtt gcaaacactg gtgataacgg tggtgaccgc 4380 aatcctctgg ttagaccgtt agatgatggc gtagatgacg aggtgcagaa cttgggcagg 4440 agggacgatt cgacatctct cattccggct aatcctaatc gatcttccag ttgggctttg 4500 ttgaacccgg atactattaa ttataacgag ttaaggaaat tgaaggtaca ctccactagg 4560 ggtgatactc tcaccttgac tcaggaagag gagttcgaga agatactcga atccttttgc 4620 aggcgaataa tcggtgagac cccgatgacg gataagattt tcgctggttt ctacatgtct 4680 atgtgtcagg ccattgtaaa ccaagggacc tcagttaaag cagccggtaa taacagtctt 4740 gaaaactact ttgaggtaga tggtgcgaga tttaagtgga aaactccgga tttgataaat 4800 gaggttagac ccaaaatgtc cgatgttcca aacgctatac gtcggtacgc cagaagccat 4860 gaaaagatta ttcaggactt tatcaactcc ggtcttatta agcctgatta tcatttacaa 4920 ttcaaacatg gcgtattacc aagccatgtg tttggtaccg gcgattatat aaatggttcg 4980 ttgatgaata tctcagatga tcaacttatc tcgaacctgc ttatgaaaag aaacgctttg 5040 tgcaagggta acgagggcaa ggaactgtac aacgttaacc aacttgcatc gataactggt 5100 tgctaaatta tatggatgaa aatgaaatct atgaggatca agaggatctc tctgctcgtg 5160 gcggtggggg tttctattac cagactgtga ctttgggttc cggtgatgtg tttcccgttg 5220 atttagccct aacgagatcg gctgaatttg attcgacaat tttctcctta tatattaggt 5280 ttgtaattaa ggaggggaat gtgcgtttaa agatcgattt tggaaataat tgggatgtga 5340 ctatgcaaca ggtgagactt tctggatggt ttgcggcgtt tggtaagatt gaaaaaccga 5400 gaaccgccag gtctggatgg tcatacccaa taaaattgtt taaagaggct ggagaagtca 5460 tagtgtccat tagtggttgg aggtgttata aaatttataa tgggtatccc gtagatcgcg 5520 ttgatttggt tctggcagta cccgttcgtg aagtaacagc cgatttaaaa cgaccattgg 5580 ttggggatta cgtcaacttt catgatgtat ttactcttat aaaaagtaaa aattctgaca 5640 tcactttacc taacccgagt ctgatattca acgattcaac aagtaaggtt aatttagatg 5700 tgtctccagg tgcgcgaaaa caaattgctc aagtcaaggc tgagaaagat ctgaacatta 5760 agaatcctga agactcaaag cctgacgttc ctaatgattt gctgagtgaa gtcgaatatc 5820 ataatcactc tgatgtttcc agtgttttca gattgtatta cacatggagg gttgaaagag 5880 attttgagag atcagttgag tcgagaattt tctttccgaa tatatttccg accgatttca 5940 caatacttca acaaatgtgg tatgggacga ctgccggtaa cgttgagact tttgtggaga 6000 taggtaaaaa tgaaaggaag ttcaacgttg gggtcgccgc ttggaaggac aatgcatttg 6060 gacatttcaa attagatggc ccgactttag cgaagatctc aacaattcca ggcaggttcg 6120 tggaccataa aattgaaaaa gactctaaag gacatttgat tgtgagtatt gataatactg 6180 ttcttgtgcg tactaacaaa gtgatagtca aaccgagtat tcagatcggt tgggaatttc 6240 atttaccatg ggacgcgatt ggaaagtatg gagttggtaa tttggccagg ttcacagaca 6300 tcatcaaacc caattacatc aagtatgatg gttctgaagt tcctttggtg caaactaata 6360 ccatagaaag tgatcgttcc aagtctggtc ataaactatc tctagtcaac ctgaaaagtt 6420 tcaaacgcat tagttctact gcagatttct tcttcgaacc accaccaccc tctgagtccg 6480 atgacaaaac ttgggaagat aagatccaaa ccgaagtgga tataaagaaa gaagagacta 6540 ttccgactaa tgagggtacc tcttcctctg acttgccgag tgagaaatca caatttgttg 6600 cagctaatca ttatctcttg tcgatagctg aagacaggaa cattttcaaa gcggctgtag 6660 atcggtacac cggattgggt ttctcaaagg atcaagctgt gttgataata tatcaattgg 6720 gggtaacatt cggcacttcc agaaattgtt gcagtgataa ttcatcgttt ctagtctgga 6780 agactgatac cggagcgcag gttataatca gaaagggcgc ccactccagg tttctcaatt 6840 cactggttaa atatccttgc aacgtggaga gattgatact acgaagacgt agtgcggaga 6900 tattggcgtt gttgaggaac aagaaattgg cttacccaga cagattggcc aaaaagaaag 6960 gggtaagtca gggattcaca tatatggcat gtgattttct cgattacact gcggtaacgt 7020 taactcaaga agagcagttg actatgaatt ctgttgtgca gtacgtgaga ctccataata 7080 aacatcgaag aagcattgtg agcacgagtc agcttttctg atcgatggag gtcgtgtaca 7140 attcagacga tgttaacagt ggagttggat ccggtgaaga tgtaaatacg accgtggcca 7200 agaactttta ttctataact cacgttatga gtaactaccg taattacaca ccagacgaaa 7260 ttaaggatgc tgtgaatata ggttatgggt tactgaattt gtgtgagagg ttggatagag 7320 atgtaatact tgtgtctccg aattcaccag tttacaacaa ttaccgagat gccggaattc 7380 cacacaatct acttatggaa aatactgcac ggtatttccc agtagttaat ccgagcgaat 7440 tgggaaaagt tctattgggt catatcagtg ttttaaagtt tttggagtat ttcacaagat 7500 acggggttga cgatatgcta atcacaagac tgttctcaaa ttttgtcttg tggtccactg 7560 gtgacttgaa cgcagcattg tattctattt atcaacagga ttttcacttt cctgttgagg 7620 taagagcgaa tttcaatttc ttatttttga attcaagtga aattgacaga aggttgagta 7680 acattagaag gaaaggttat ccaaactctg agaatttcaa ttggttcaaa aatatgataa 7740 gtaattactt atattttgat tttgtgttca gatactctgg tacaaaaatc aatatagaaa 7800 gaatctcaaa ttattatatt tgattttcaa tatgatttcc acttatttta ccttaatagg 7860 tttaattttc ttggtggtat tctgttttgt tttattgtgt tatttcgtct tcactgtcat 7920 taaattcttc gcgaaagata agataagtga cgatgattgt ccttatgtca ataatgttgc 7980 tccattcggg agtaacaggt ttaactcaca acctccaata gttcgttaaa gcactatctt 8040 acggttggat taataaaaat ttttaaggag tttttgataa agttttcttc ttcgggttat 8100 ttacttcgta ttttataaaa tcccaaaaat atatgaaaga ttttacatat tgttctgttt 8160 agttggtgta aaattctatc tacctaaatt acgtgttata cacgtaaacc ttggtagatt 8220 tagtatataa ataaataggt cg 8242 //