ID   KC841797; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   KC841797;
XX
DT   29-MAY-2013 (Rel. 116, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 3)
XX
DE   Citrus tristeza virus isolate T524 coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
XX
RN   [1]
RP   1-672
RX   DOI; 10.3389/fmicb.2013.00366.
RX   PUBMED; 24339822.
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T., Yokomi R.K., Lee R.F.,
RA   Folimonova S.Y., Krueger R.R., Bash J., Greer G., Diaz J., Serna R.,
RA   Vidalakis G.;
RT   "Past and future of a century old Citrus tristeza virus collection: a
RT   California citrus germplasm tale";
RL   Front Microbiol. 4:366-366(2013).
XX
RN   [2]
RP   1-672
RA   Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA   Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA   Serna R.S., Vidalakis G.;
RT   ;
RL   Submitted (28-MAR-2013) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, 900 University Ave., Riverside, CA 92521, USA
XX
DR   MD5; 2ee4568bb8158a1ecd2a0b8b6f560092.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Dragon v. 1.5.3
CC   Assembly Name         :: CTV-CP
CC   Coverage              :: 3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /lab_host="Citrus sinensis"
FT                   /isolate="T524"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Ave 392 Road 168, Tulare County, California"
FT                   /isolation_source="originally from Lemon in Hatakeda grove
FT                   (Citrograph Aug. 1975, pg. 368)"
FT                   /collected_by="Dave Cordas"
FT                   /collection_date="1981"
FT                   /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT                   cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT                   rev_seq: gatgaaactccaccatcccgata"
FT                   /note="T524 is maintained in planta at the Citrus Clonal
FT                   Protection Program (CCPP), University of California,
FT                   Riverside; acronym: CTV; genotype: VT"
FT                   /db_xref="taxon:12162"
FT   gene            1..672
FT                   /gene="CP"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="major coat protein"
FT                   /db_xref="GOA:R4VFV1"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:R4VFV1"
FT                   /protein_id="AGM39394.1"
FT                   /translation="MDDETKKLKNKNKEKKEGDNVVAAESSFGSVNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT
FT                   YTREGVEVELSDKLWTDVVFNSKGIGNRANALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 194 A; 118 C; 175 G; 185 T; 0 other;
     atggacgacg agacaaagaa attgaagaac aaaaacaagg aaaagaaaga aggcgacaat        60
     gttgttgcag cagagtcttc tttcggttct gtaaacttac acatcgatcc gactctgata       120
     gcaatgaacg atgtgcgtca gttgggtacc caacagaatg ctgctttgaa cagagatttg       180
     tttcttacct tgaaagggaa gtatcctaat ttgtctgaca aagacaagga ctttcactta       240
     gctatgatgt tgtatcgttt agcagttaag agttcatcat tgcaaagtga tgatgacacc       300
     acgggtgtga cgtacactcg ggagggtgtt gaagtggaat tgtctgacaa actttggaca       360
     gacgtcgtgt ttaattctaa gggtattggt aaccgtgcta acgcccttcg agtctggggt       420
     agaactaacg atgcccttta tttagctttt tgtagacaga atcgcaattt gagttatggt       480
     ggacgtccgt tagatgcagg gattccagcc gggtatcact acctgtgtgc tgatttcttg       540
     accggagctg gcttgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg       600
     ttaaagaagc gaggggctga cgaggtcgta gttaccaatg tcaggcagct tgggaaattt       660
     aacacacgtt ga                                                           672
//