ID M28817; SV 1; linear; genomic RNA; STD; VRL; 2774 BP. XX AC M28817; XX DT 02-FEB-1990 (Rel. 22, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Cowpea chlorotic mottle virus RNA2, encoding 2a protein, complete cds. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2774 RX DOI; 10.1016/0042-6822(89)90134-7. RX PUBMED; 2773323. RA Allison R.F., Janda M., Ahlquist P.G.; RT "Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a RT recombination event during bromovirus evolution"; RL Virology 172(1):321-330(1989). XX DR MD5; d5916ce057bb3ee605f02061a1d52662. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2774 FT /organism="Cowpea chlorotic mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12303" FT CDS 110..2536 FT /codon_start=1 FT /note="2a protein" FT /db_xref="GOA:P20179" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="UniProtKB/Swiss-Prot:P20179" FT /protein_id="AAA46371.1" FT /translation="MSKFIPEGETYHVPSFQWMFDQTLESDSHHDEAIFVTESINESGV FT DTSVEITADGTLASYMHAVKPLVEDGLLNPPFDQARWGLCCKNVVDVYDGLLGYRLIPM FT AEAARMLYLEIDGSFVDESECDDWRPVDTSDGFTEAMFDVMNEIPGEETKNTCALSLEA FT ESRQAPETSDMVPSEYTLADRYVTTREEFASVDSDYDISLNLVSPVEFRVGVCEDTYRH FT SEADDPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELGDYNVDISKLSVRQ FT SDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEV FT AEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIK FT SDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKIS FT SLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESM FT LSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSGDDSLLICK FT SKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQRLAKRKI FT IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKKPDVENDVRVAIAAFGYY FT SENFLRFCECYATEGVNIYKVKHPITQEWFEASRDRDGDWFHDWRNPKFPTALDKVWRF FT FGKYARDDPMKHIEERDRRHRLNRAMNSSLKLAYDRRSLSKDKETVAWVRKTLSK" XX SQ Sequence 2774 BP; 769 A; 521 C; 655 G; 829 T; 0 other; gtaatccacg agagcgaggt tcaatccctt gtcgactcac gggtctccat cagttgaaaa 60 cagtttatac attttcttct tgatattttt cttctttact tccattaata tgtctaagtt 120 cattccagaa ggtgagactt accacgttcc ctcattccaa tggatgtttg atcagactct 180 cgaatctgac tcacaccatg atgaggcgat attcgtaacc gaatcgatta atgaaagtgg 240 agttgatact tctgttgaaa taaccgcaga tggcacgcta gcaagttata tgcatgccgt 300 aaagccccta gtggaggatg gtcttctgaa tccccctttt gatcaagcta gatggggtct 360 ttgctgcaag aacgtcgttg acgtttatga cgggctgctc ggttatagac tcataccaat 420 ggctgaagcc gctagaatgt tgtacttgga aatcgacggt tcattcgttg atgaatctga 480 gtgtgacgat tggcggccgg tagatacctc tgatggtttc accgaagcaa tgtttgatgt 540 gatgaatgag attcctggcg aggaaacaaa aaatacatgc gctttaagtc ttgaagctga 600 atcaaggcaa gctccagaaa cttccgatat ggtgccgtct gaatatacgt tggcagatag 660 gtacgttacc accagagagg agttcgcgtc tgttgactcg gattatgaca tatccttaaa 720 cctggtgagc cctgtggagt tcagggtggg agtgtgtgaa gacacatacc gtcattcgga 780 agctgatgat cctacgatgc ctcaatatca cgataggatc agtttaaaat cgctggaggc 840 ggctggccat cacatgttac cgactcatgc ctattttgac gacacttact accaggcttt 900 ggaagagcta ggcgattata atgtcgatat tagtaagttg tctgtccggc agagtgatgt 960 tgattggtat cgtgaccctg aaaagtacta tgagcctgag ttaagtatag ggtcattcca 1020 acgtagaata ggtacgcaaa agacggtcct taccgcgtta aagaaacgga acgctgacgt 1080 gcctgagtta gcagattctg ttgatattaa aagagtagcc tgtgaagtag ctgaaaaatt 1140 taaacgggct tatcttaatc attccggtat agggctgtta gggcaaagta tggatgtcat 1200 gtccagagga cttgagtacc ataagaaatg gaaagaccac aaagacctga ctggtgtgac 1260 agttttgtct gagattaatt tgcagaggta tcagcacatg ataaagtctg atattaaacc 1320 agttgtctcg gatacgttac acctcgaacg agctgttgct gcaacaataa catttcatgg 1380 taaaggagtt actagctgct tctcaccata ttttacggct tgtttcgaga agttttcaaa 1440 agctttaaaa tcaaggtttg tggtccccat agggaagatc tcctccctgg aactgaaaaa 1500 tgttcccctc tcgaataaat ggtttcttga ggcggatttg agtaagtttg ataaatctca 1560 gggtgagctt catcttgagt tccaaagaga gatattgttg tcattgggtt ttccagcccc 1620 tttgactaat tggtggtgtg atttccatag ggaatctatg ctatcggatc ctcatgctgg 1680 agttaacatg ccagtttcct ttcagcgtcg tactggtgat gcttttactt attttgggaa 1740 tactttggtg actatggcca tgatggccta ttgttgcgat atgaacaccg tggactgtgc 1800 tatcttttcc ggtgatgatt ctctgttaat ttgtaaaagt aaaccacatc tggatgctaa 1860 tgtttttcaa tctctgttta atatggaaat taaagttatg gacccaagtt tgccatacgt 1920 ttgtagtaag tttcttttag aaactgaaat gaataacttg gtgtctgtgc ctgatcctat 1980 gagagagata cagagactgg ctaagcgaaa gatcatcaaa tcgcctgagt tgttaagagc 2040 ccactttgag tccttttgtg ataggatgaa attcctaaac aaattggatg aaaaaatgat 2100 aaatttatta tgcaagtttg tggctctcaa gtataaaaaa cctgacgttg aaaacgatgt 2160 cagagtagcc attgctgctt tcggctacta ctcagaaaat ttcttgagat tttgcgaatg 2220 ttatgcgact gaaggggtca atatatataa ggtaaaacat cccatcaccc aggagtggtt 2280 cgaggcctct agggatcgag acggtgactg gttccatgac tggcgtaatc cgaagtttcc 2340 cactgcctta gataaggttt ggagattctt tggaaaatac gcgagagatg atcctatgaa 2400 gcacatagaa gagagagata ggagacatag gcttaatcga gccatgaatt cttccttgaa 2460 acttgcctat gatcgtagga gtcttagtaa ggataaagaa accgttgcgt gggtgcgtaa 2520 gaccctttct aaataatgtt ggtcacattt aagacttgtt tagtccacat taggactggt 2580 tctaacagtt tctttaaact gtaatcgtcg ttgcgacgtt ggtttgctta caagcaatca 2640 agctgccttt gagttttact ccttgaactc ttcagaagaa ttcttcggaa ttcgtaccag 2700 tatctcacat agtgaggtaa taagactggt gggcagcgcc tagtcgaaag actaggtgat 2760 ctctaaggag acca 2774 //