ID U13988; SV 1; linear; genomic DNA; STD; VRL; 8174 BP. XX AC U13988; XX DT 29-NOV-1994 (Rel. 41, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Peanut chlorotic streak caulimovirus, complete genome. XX KW . XX OS Peanut chlorotic streak virus OC Viruses; Ortervirales; Caulimoviridae; Soymovirus. XX RN [1] RP 1-8174 RA Richins R.D.; RT "Organization and transcription of the peanut chlorotic streak caulimovirus RT genome"; RL Unpublished. XX RN [2] RP 1-8174 RA Richins R.D.; RT ; RL Submitted (25-AUG-1994) to the INSDC. RL Richard D. Richins, Botany & Plant Science, University of California, RL Riverside, Bachelor Hall, Riverside, CA 92521, USA XX DR MD5; cb42ea17f1dc2d4a99b28a17930d311d. DR EuropePMC; PMC5747845; 29291233. XX FH Key Location/Qualifiers FH FT source 1..8174 FT /organism="Peanut chlorotic streak virus" FT /host="Arachis hypogea" FT /lab_host="Nicotiana tabacum" FT /isolate="K1" FT /mol_type="genomic DNA" FT /clone="pPClSV-K1" FT /db_xref="taxon:35593" FT primer_bind 1..14 FT /note="position in PC1SV genome where methionine tRNA FT (primer) anneals to the viral nucleic acid to initiate FT reverse transcription of the viral replicative FT intermediate" FT CDS 1183..2571 FT /codon_start=1 FT /note="putative major capsid protein" FT /db_xref="GOA:Q84681" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:Q84681" FT /protein_id="AAA50239.1" FT /translation="MDNIDRLTQLLEKMNLGNMAKLDEEDAEGIIRGIDSDDEGPTFNM FT EKSFRNCSPSGNLTPSKRPKVEEGETSQQEDFQAKLDKSFRDYSYKKIHGKTDKKVPFK FT YLQKERGIEDGILNNHCAENQEELILAWINRLKLKVQSGDETIRNLALSDFVTYLQYQT FT TGVLADWAQNTQIPFPQGLTGSETTAEAKLQYLNRYAQEIFSEFIGYGPDEARKEDKPN FT IIRILSNMKLCDPCYIENFFCQVEANYYKVTDRTGLLDIVLSKMPPPMVTYIQTQINDP FT SRTRRILTLGLIRRFAIEYRQNLCLRKIEKNYIRNVDPKCCKQLDDVPQEYGCSQPYRY FT KKKRKPFRRIKARKYPYRKWKPKYRYKVRRKGYSKQQNKQKTCPRGKKTCRCWICQEEG FT HYANECPNRKINQKKDKYVRMLYSVGYEPIEEDYETDESLDFDIYSLTSETDSETESEN FT EFEE" FT CDS 2555..4639 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:Q84682" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q84682" FT /protein_id="AAA50240.1" FT /translation="MSSKNSSFIKVKLFNKYLYAYIDTGATICLAQAKILPIKYWKKMI FT KPIKVRIANNKVIHIWYKAVDLVLLLEGKRFPLPSVYQQDAGLPLILGNNFLKLYNPFI FT QTLETISLRCPQLEKQPSSLITTKIYNTFSLFGGVIVNILKQQIYIAIEDEVTQLLEAI FT CSQNPLDPQKNRNQIIVHIDLIDPTKEVNVPNRIPYTQKDIDEFREETSKQIELGILRQ FT SKSPHSAPAFYVENHNEIKRGKRRLVINYKMNKATKGDAYNLDRLYLTDRESNWFSTLD FT AKSGFLQLRLDEETKPLTAFSCPPQMHLEYNVMPMGLKQAPSQFQRFMDNNLRGLEDIS FT LAYIDDIIVFTKGTKDYHLKQVARVLIQLGNHGVILSKEKAKIAFEEIEFLGLKILKNG FT FIEPQKHLLEKIAEFPDQLQDRKQIQKFLGCLNYIGEKGFFKELAKERKVLQKMLSEKL FT PWKWNDLATLAVKRLKQVCKNLPRLYVAKPSDLLILTTDASDTTWGAVLMAVPNAYEEF FT LSFVTNNRPSDLKTFLKQKEGSSRYAEKSVPEKLNSMHDKSHGEKAEKSVSRQTSQGRS FT SSQSQQSYIGSFMITKWSSGTFKPAEENYTVHEKELLAFVNALKKFQIDLRPVKFIFQT FT DNSWVQGFLVNKLKETYNRGRLARWSMFIQQFDFISLHIAGKENYLADTLTREWKTSSR FT " FT CDS 4618..5880 FT /codon_start=1 FT /note="putative transactivation protein" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:Q84683" FT /protein_id="AAA50241.1" FT /translation="MEDIFKMISEKKEKLKEEIEEKRSLVSRLQKEISDKEKELSALSQ FT TEQSLGLSIKKEQPEKLVIQSSSEKYDEEERAKRYYVIYNGPGKGIYDEWGKASLFITG FT VKGIRHKKFLSKKEAQDSFNEENKEAAKTAEVSKAYLEKLQSPKPQTSRMVNLGKIPSP FT RTIDHILTKADLQEKARLTKKIYDDDYMFLKKYSDDDKQTSIYPVDSKSLGAKAVVLPE FT ADNIKTYMLYQCGFIHAIYFKSLDIFRYFPENMKRAIQVYAQRMLKAEKGMREGFLRIY FT STNPEFDESGEVVQPAIQLCQIGGSNSNYPVMGVIEDVDELEAFLHNYTYILQKGISVQ FT GRINYSAKSTIIWSQQARKPSEQDIQILTEFLLRTVKNEFNFSAEVKQEICLRLQRDFS FT EDHVCQLCEQSSGDLEPIKEE" FT CDS 6848..7810 FT /codon_start=1 FT /note="putative cell-to-cell transport protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q84684" FT /protein_id="AAA50242.1" FT /translation="MSREESSMSEIQEIVSHEEEGSYLVDILLDNKLVTKIKNNGHLDL FT ESNEGINQKILEKINRKNIIYNGIMCGEQSVPIEQATAKFQAPVVKISQVQERLKKIKE FT TDRKKIGFIHVNVVQIVIRSTFREGITTPVIIRVEDNRIQDKRYSLLGQIEGDLGYGVI FT KFNVTLQYPIPLITRSFNNCIGVICEFRKQDLMKQGDIPLVVCYRIAYALTNSAISLQY FT KHLDRLYTNKIFSETSTIIRTDQVQKNFLREHSQRFPSLQIGESSSQNRLIPTESGSQL FT APPTRKDNLYKEDREDQIEKIRKQVNELSTVVTSLDKRI" XX SQ Sequence 8174 BP; 3234 A; 1270 C; 1550 G; 2120 T; 0 other; ggtatcagag ctagacacag acctaaataa tctagagcta gacataaatc cagataattt 60 aggtaaaaat gcctagaaga gaagctaatc aagtgtcagt taatgaatct agacgtcata 120 gtaagatagt tgagaaaatt gaaaataaaa tctcaatttt agaaagtcat tgtaatactg 180 aaggaaagaa atttatattc agcagttaca agaaacaagt caaaagctca agccttaaga 240 aagtggtatc aaggaaaaat tgtcacagga taatagtttt actatatatc tgtgcaatat 300 gtcagaacag acttcgtctg gagttaagag aactttatgt tctacagaat ccttttaaga 360 gtcagttgtt aaatgaagta gttataggat catctacatc gacaacagaa tttccaggat 420 tgccagtcag agagaaagtg ttcaatatcc ctaaaaatgg atatagaaca gactatcaac 480 ttagcagtct taaggaggat acagtcaata agagtctcac aggtaatgtt gctagtattc 540 tgaagattca aaataatcat acagaaatac tatcatacat agtagagata ttgtttaatg 600 aaattaacaa tcctattaag gaattgttaa aaagaattaa acaagaggta caaaacctgc 660 agacagtccc tttagaaccc gatagtcagc caatagacca ggtcaaccta gaaataggaa 720 ctctaagatt agagttagaa gagattaaaa aggagattga gaaaactaat cagaacttag 780 ctaaactctt agaaagaata tgagtgatcc acctagagta gcagatcaac tccagacaat 840 aatagatcta ttaagacaaa gcactgcgga aacgcataac aggcttagtc aaatagaatc 900 tatagttaat aataaaccaa gaaaacctta taggtatcaa tcagttatag actacctaaa 960 aacacaaggt aggttagaag atgaaggaac ctcaacttcg tcggaaccag tcattgtagg 1020 aaaccaatgc gttagtccta cagaagctat atcgattctc caagaattga tcaatgagca 1080 aagtcaaaga aagtgtttaa ccaaagaaga gttaataagt ttctttaaac agtcccaacc 1140 tcctaaaaga accacacctt tagaaccacc ttttaggaag taatggataa tatagacaga 1200 cttacgcagt tattagaaaa aatgaactta ggcaatatgg ctaagttaga tgaagaagat 1260 gcagaaggca taataagagg aatagatagt gacgatgaag gaccaacatt taatatggaa 1320 aaatccttca ggaactgttc cccatcaggt aacctcacac cttctaaaag acctaaggtt 1380 gaagaaggag aaaccagtca acaagaagat tttcaagcga aacttgataa atcttttaga 1440 gattatagtt ataagaagat acacggtaaa accgacaaga aagtaccatt caaatacctc 1500 caaaaagaaa gaggtattga agatggaatc ctaaataacc attgtgcaga aaatcaggaa 1560 gaactaattt tagcatggat taatcggcta aaattaaagg tacaaagtgg agatgagaca 1620 attagaaatc ttgcgttgtc agattttgtt acttatctgc aataccagac tacaggagtc 1680 ttagcagatt gggcacaaaa tactcagata cctttcccac aaggattaac aggtagtgag 1740 acaactgcag aagcaaaatt acaataccta aacaggtatg cacaagaaat cttttctgaa 1800 ttcatcggtt atggaccaga tgaagctaga aaagaagata agccaaatat cattagaatt 1860 cttagtaaca tgaaactttg cgatccatgt tatatagaga atttcttttg tcaagtagaa 1920 gctaattact ataaagtaac agatagaaca ggattattag atattgtctt aagtaagatg 1980 ccaccaccta tggtcactta cattcagaca cagataaatg atcctagtcg aactagaaga 2040 atcctaaccc taggattaat aagaagattt gctatagagt ataggcaaaa cctatgtctt 2100 agaaaaatag aaaagaatta cataagaaac gtcgatccta agtgttgtaa acagttagac 2160 gatgttccac aagaatatgg ttgttcgcaa ccatacagat ataagaaaaa gagaaagcca 2220 ttcagaagaa ttaaagctag aaaatatcct tatagaaagt ggaagccaaa atataggtat 2280 aaggtaagaa gaaaaggata ttctaagcaa cagaataagc aaaagacatg cccaagaggt 2340 aagaaaacat gtagatgttg gatatgtcaa gaagaaggac actatgccaa cgaatgtccc 2400 aataggaaga taaatcagaa aaaggataaa tatgttcgta tgctatatag cgtaggatat 2460 gaacctattg aagaagatta tgagacagat gagtcattag attttgatat ttatagtttg 2520 acctcagaaa ctgattctga aacagagtcg gaaaatgagt tcgaagaata gcagttttat 2580 caaagtcaag ttatttaata agtatttgta tgcttatata gatacaggtg caacaatttg 2640 ccttgcacaa gccaaaattc tcccaataaa atattggaag aagatgatca agccaattaa 2700 ggtacgtatt gctaacaata aagtcataca tatttggtat aaggcagtag acttagtttt 2760 attgcttgaa ggaaaaagat ttcctttacc aagtgtctat caacaagatg caggattacc 2820 attaatctta ggaaacaact tcctaaagct atataatccg ttcatccaga cattagaaac 2880 cattagcttg cgatgtccgc agcttgagaa acagccaagt agtttaatta ctactaaaat 2940 ttacaacacc ttttctcttt tcgggggggt gattgttaac attttaaaac agcaaattta 3000 catagctata gaagatgaag ttacacaact tctcgaagcc atttgtagtc agaacccttt 3060 agatcctcag aaaaacagaa atcagataat agttcatatt gacttaattg acccaactaa 3120 agaagtcaat gtcccaaata gaatccctta cactcagaaa gacatagatg aatttcggga 3180 agagacatct aaacaaattg agttaggtat tcttagacaa tcaaagagtc cacatagtgc 3240 accagcattc tatgtagaaa atcataatga gataaaaaga ggaaaaagaa gattagtcat 3300 taattacaag atgaataagg cgacaaaagg tgatgcatat aatctagaca gactatatct 3360 tacagataga gagtcaaatt ggtttagcac tttagatgct aagtcaggat ttcttcagtt 3420 aagattagat gaagaaacca agccactaac tgcatttagt tgtcctccac aaatgcattt 3480 agaatacaat gttatgccaa tgggtcttaa acaggcacca agccagtttc aaagattcat 3540 ggataataac cttagaggtt tagaagatat tagccttgca tatattgatg atataattgt 3600 ttttactaag ggaacaaaag attatcatct taagcaggtt gcaagagttt tgatacagct 3660 aggaaaccat ggcgttatcc tcagcaaaga aaaggcaaaa atcgcttttg aagaaattga 3720 gtttctcggt ttaaagattt tgaaaaatgg atttattgaa ccacagaaac atcttttaga 3780 aaagatagct gaatttccag atcagctaca agacagaaag caaattcaga aatttctcgg 3840 atgtttaaat tacattggag aaaaaggatt ttttaaggaa ttagcaaaag aaagaaaagt 3900 tttacagaaa atgctttcag aaaaacttcc atggaaatgg aatgatttag ccactctggc 3960 agttaaaagg ttaaaacagg tttgcaaaaa cttaccaagg ctgtatgttg caaagcctag 4020 tgatttattg atattaacta cagatgctag tgatactaca tggggagcag tccttatggc 4080 agtacctaat gcatacgaag agtttttatc atttgtcacg aacaatcgac cttctgatct 4140 taagactttc cttaagcaga aagaaggatc gagcagatat gcagagaaat ctgtgccaga 4200 aaagctaaat agtatgcatg acaaaagtca tggggagaaa gcagagaaat ctgtatctcg 4260 acaaacttct caaggaagaa gttcaagtca gtcacagcaa agctatatag gatccttcat 4320 gatcacaaaa tggtcttctg gtacctttaa accagcagaa gagaactata cagttcatga 4380 aaaagagcta ttagcatttg taaatgcttt gaaaaaattc cagattgatt tgagaccagt 4440 taaatttatc tttcaaacag ataatagctg ggttcaagga tttttggtta ataaattaaa 4500 agagacatat aacagaggaa gacttgctcg gtggagcatg tttattcaac aattcgattt 4560 tatttctttg catattgcag gaaaagaaaa ttatctagca gatacattaa ccagagaatg 4620 gaagacatct tcaagatgat ctctgagaaa aaagaaaagt taaaagagga gatcgaagaa 4680 aaaagatctc tagtcagcag actacaaaaa gagatatctg acaaagagaa ggagctctct 4740 gcactcagtc agacagaaca atcccttggt ctttccatca agaaggagca gccggaaaag 4800 ctagtcatcc aatcctcatc agaaaaatat gacgaggaag aaagagccaa aagatactat 4860 gtcatataca atggaccagg caagggtatc tatgatgaat ggggaaaagc aagcctattc 4920 attaccggag tcaaaggaat cagacacaag aagtttctca gcaaaaagga agcccaggat 4980 agcttcaatg aagaaaacaa agaggcagca aagaccgcag aagtatccaa agcatatttg 5040 gaaaagttgc agagtccaaa gccgcagaca tcaagaatgg ttaatctagg aaaaatacca 5100 agtcctagaa ccatagacca tatcctgaca aaagcagatt tgcaggaaaa agccagactc 5160 accaaaaaga tatacgacga cgactatatg tttctaaaga aatactcgga cgatgataag 5220 caaacaagca tctacccagt agactcaaag tcacttggcg cgaaggcagt agtgctacca 5280 gaagcagaca acatcaagac atacatgtta tatcagtgtg gatttatcca tgccatttac 5340 tttaaaagtc ttgatatttt cagatatttt ccagaaaaca tgaagcgagc aattcaagtc 5400 tatgctcaac gcatgttaaa agcagaaaaa ggtatgcgtg aaggatttct ccgtatctac 5460 tcaaccaacc ctgagttcga tgaaagtgga gaagttgttc aaccagcaat ccagttatgt 5520 caaattggcg gaagtaactc caattatcca gtcatgggag ttattgaaga cgttgacgag 5580 ctagaggcat ttcttcacaa ctacacttat atcctacaga agggaatcag tgttcaagga 5640 agaattaact attcagccaa gtcaacaatc atctggagcc aacaagctag gaagccgtct 5700 gagcaagata ttcagatcct tacagagttt ttacttcgga cagtcaaaaa tgagtttaac 5760 ttctcagccg aggtaaaaca agaaatatgc ttacgtctac agagggattt ctctgaagat 5820 catgtttgcc agctatgcga acaatcatcg ggagatcttg agccaatcaa agaggagtga 5880 tgtagaccta aagcaataat ggagccatga cgtaagggct tacgccatta cgaaataatt 5940 aaaggctgat gtgacctgtc ggtctctcag aacctttact ttttatattt ggcgtgtatt 6000 tttaaatttc cacggcaatg acgatgtgac ctgtgcatcc gctttgccta taaataagtt 6060 ttagtttgta ttgatcgaca cgatcgagaa gacacggcca tttggacgat catttgagag 6120 tctaaaagaa cgagtcttgt aatatgtttt tcagagataa taaaattatg atattcagtt 6180 attctatgag tcactagaaa cctttcaagg ttatagctag tagaggtata ctgttataga 6240 aatagcagat ttccagattt cactgaagag cgcgtcagga actcgcacga ctgaagccag 6300 gtgggcgttt atgtgctgga ggccgcaagc gttgtgaaag gaagggctat agatatatca 6360 ggtatatttc gaacgctgta atcttgaagt tttaaatcat agaattttct ctgaataaga 6420 aatatgaaat cctatcagat aaaattagac gaacaaaatt atagtcaata tcatgttatt 6480 gcatatgtta ataaacagct atgcatcata ctaatagaca caggagcatg ttcatcccac 6540 atctccaagg atctaacata tgagatatat gatggaggaa atccaatatc atatataaca 6600 tatgatggtg aggaagtcac caatgaaaag ttagccagtg tagaaataat ctttacaaaa 6660 gacataaaga taaatgttga aataccagta gataatcgta gaaacccaga aaagaaaaaa 6720 gttttgttag gaattgattt cttagaaaat tttgattata agataactag taaacatttg 6780 atcttagata acatagttat ccccagaatc aacatgtttt ataaagacat ccagaaagct 6840 atctataatg tctagagaag aatctagcat gtcagaaatt caggaaatag tttcccatga 6900 ggaagaagga agttatttag ttgatatact tttagataat aaattggtaa caaaaattaa 6960 aaacaacggt catctagacc tagaatctaa cgaaggtata aatcagaaaa tcttagaaaa 7020 gataaatagg aagaatatca tttataatgg tattatgtgt ggcgaacaaa gtgttcccat 7080 agaacaagct acagctaagt ttcaagcacc agttgtaaaa atcagtcaag tccaggaaag 7140 actaaagaaa ataaaagaaa ctgatagaaa gaaaatagga tttatacatg ttaatgttgt 7200 tcagatagta attagaagta cctttagaga aggtataact acaccagtca taataagagt 7260 tgaagacaat agaattcaag ataaaagata tagtttatta ggacaaatag aaggagatct 7320 aggatatggt gttataaaat ttaatgtcac cttacagtat cctattccat taataaccag 7380 gtcattcaat aattgtatag gagtcatttg tgaatttaga aaacaagatt taatgaaaca 7440 aggagatatt ccgttagtcg tttgttatag gatagcatat gccttgacaa acagtgctat 7500 aagtcttcaa tacaaacacc tagataggtt gtatactaat aagatattta gtgaaacaag 7560 tacaatcatt agaactgatc aggtacagaa aaatttcctt agagaacata gtcaaagatt 7620 tccatcctta caaataggag aatctagtag tcaaaataga ctaatcccaa cggaatcagg 7680 tagccagtta gcacctccaa caagaaaaga taatctatat aaagaagata gggaagacca 7740 gatagaaaaa attaggaaac aagtaaatga attaagtaca gttgtgacat cattagataa 7800 aagaatatga aaagaaaaac tagttacact agaggtccat ataagaaaca gaaagataag 7860 ataacaacag aagaagatat aggaaatatg ttaatagagt taaaagattt taaaaatagg 7920 ataaaacgaa tctttagtat gagctattat agaagtagaa taatagaaac aatacaacga 7980 gaaatagatt gtctagaaaa agtcaggaaa aagcaagaag caagaactga tgaaattcag 8040 aagttaaaat tccgcataga acaattagaa aatgaatcat ttagtcttga tatagatgaa 8100 atcttaagaa gcttagatga agtaagtcaa gaagaaagta taaaggaatc ggccttagaa 8160 ccgaccccag cgat 8174 //