ID U80934; SV 1; linear; mRNA; STD; VRL; 3491 BP. XX AC U80934; XX DT 06-MAR-1997 (Rel. 51, Created) DT 06-AUG-2001 (Rel. 68, Last updated, Version 4) XX DE Tobacco streak virus putative viral replicase mRNA, complete cds. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3491 RX DOI; 10.1007/s007050050366. RX PUBMED; 9687875. RA Scott S.W., Zimmerman M.T., Ge X.; RT "The sequence of RNA 1 and RNA 2 of tobacco streak virus: additional RT evidence for the inclusion of alfalfa mosaic virus in the genus Ilarvirus"; RL Arch. Virol. 143(6):1187-1198(1998). XX RN [2] RP 1-3491 RA Scott S.W.; RT ; RL Submitted (04-DEC-1996) to the INSDC. RL Clemson University, Plant Pathology & Physiology, Long Hall, Clemson, South RL Carolina 29634-0377, USA XX DR MD5; a22da8670d9a3cb2da55cedcf7187869. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..3491 FT /organism="Tobacco streak virus" FT /lab_host="Nicotiana tabaccum cv Samsun" FT /mol_type="mRNA" FT /db_xref="taxon:12317" FT 5'UTR 1..37 FT CDS 38..3322 FT /codon_start=1 FT /product="putative viral replicase" FT /db_xref="GOA:P89680" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P89680" FT /protein_id="AAB48983.1" FT /translation="MDSLSLPTVCDVVVPALNVDNLIRDYVSNVRADDSNNVSRFLGEV FT ALKEIKSQVDTSNGDFQKLNVGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHR FT VCETLNIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLA FT ASVENRHRELPVDFCCHKFEECDVKAPFAMAIHSISDIPISTVATHCVRRGVRKLIASV FT MMDPLMMLYDKGHIPLLNVDWEKEDVEETGKTLIHFHFVDAPGLSYSHDFDTLSQYMIT FT NQVIVNNSYSFRVERTACLSGVYIVEMTLSMTDGHSLAYLKPMRDVSCAWLSSLRKKVF FT VKLAVPISAEWYTEQFEVRHALMDESLVRYVSEAAFRQFSKTKDPETLVQYIATMLSSS FT SNHVVINGITMRSGSPIKFDEYVPLAVTFYVMAAWRYKMIAPGIDAVKTRTEKNVDILD FT EKGLIKEDFNVVNALLEDAGLIEPKLPHFTDVIKNAGLRGFGKKTIEKTRDDVLLIKPR FT SLLREVIYTVRSVFGLTILDSDYNLVSGVPSHMKATHVWSVFVGNLAFPSCLNVNECVN FT ELLVNHMEMMEETKKEETRQQAFKDARDRALMTIAKAIEKDQTIKDGLLPILDLCKIKE FT ELTAASNSLSLTPEAIEQTDSRLMKASGSDVNPYADSIKEAIHYFNEVEVANTRNLRSL FT GIYLGWSIPKNKQTYDALQGRNESVRVYVPYENKWYPSAPTSQYERAMTVDGYFSLPME FT FEAITDGCRREISKYHLLVVDDSCIFCSGQRMIPALEAALKLVPTFKITIVDGVAGCGK FT TTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDSYLMLKSWF FT SAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKI FT SCTTDHLQMSKRCHSLFKENFLQKQDCEVSERCSSLAELCPIQSVIQIQPERDVLYMTH FT TRADKETLMRIPGMPKDRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPDLGPCHNL FT VAISRHRKSFRYFTVAPHDNDDQIVKCINYARSLSSGDLDGVRVLI" FT 3'UTR 3323..3491 XX SQ Sequence 3491 BP; 984 A; 693 C; 807 G; 1007 T; 0 other; gtattactgt tttgtatccg aaacagaacc tccagaaatg gattccttat ctttacccac 60 cgtgtgtgac gttgttgttc cggctttgaa cgttgacaat ctcattcgag attatgtcag 120 taatgtgaga gccgatgata gcaacaacgt cagccgcttc cttggtgaag tagccctgaa 180 agaaattaaa tctcaggtag acaccagtaa tggtgatttc cagaagttga acgtcggttt 240 tcgtttgact cctgatgaga aaaatgcact gaaagcgaat tttcccggtc tcgaaattgc 300 gtttagagac tcgtgtcatt cgtcacacag ttttgccgca gctcatagag tctgtgagac 360 cctaaatata tacaatcggt ttaaaacaaa aaccgagcgc attatcgatc ttggcggtaa 420 ctatgttaca cacgccaaac aaggtcgttc taatgtgcat tcctgctgtc ccatccttga 480 tgttagggac ggtgctaggc ataccgatcg gtatatatct ttagctgcct ctgttgagaa 540 tcgccacaga gagttaccag ttgatttctg ttgccataag tttgaggagt gtgatgttaa 600 ggcacctttt gccatggcta tccattccat cagtgacatt cccatctcaa cggtcgcgac 660 acattgcgtt aggcgtggtg tgcggaaact tattgcgtcc gttatgatgg atccacttat 720 gatgctttat gacaagggtc atataccttt actcaatgtt gattgggaaa aagaggacgt 780 tgaagaaacg ggaaaaacac tcattcattt ccattttgtt gacgctcccg ggttgagcta 840 ttcacacgat tttgatacac tgtcccaata catgattaca aaccaggtta ttgttaataa 900 ttcctactct tttagggtag agaggacagc ctgtttatca ggtgtgtata tcgtggagat 960 gactttgtct atgacagacg gtcattcttt agcttacctg aagcccatgc gtgatgtttc 1020 atgcgcttgg ttgtcaagtt tgaggaagaa agtcttcgtt aaattagccg tacctattag 1080 tgccgaatgg tatactgaac aattcgaagt taggcacgcg ctaatggacg agtcattagt 1140 tcgctatgtt tccgaagctg ctttccgaca gttttcgaag acaaaagacc ccgaaacact 1200 ggttcagtac atagcaacta tgttatcttc ttcatcaaat cacgtggtca taaacggaat 1260 aacgatgcga agtggtagcc ctataaaatt tgatgaatat gttccattag ccgttacttt 1320 ctatgttatg gccgcgtggc gttacaaaat gattgcccct ggtatcgatg ctgtaaaaac 1380 aagaaccgag aagaacgttg atattctcga tgagaagggt cttatcaagg aagactttaa 1440 tgttgtcaat gcgcttcttg aagacgctgg gttaattgaa cccaagttgc cccatttcac 1500 ggatgtcata aaaaacgcag gactccgagg atttgggaag aaaacgatcg aaaaaaccag 1560 ggatgatgtt ttattgataa aaccaaggag cctgttgcgt gaagtgattt acacggtccg 1620 aagtgttttc gggctcacga ttttagactc ggactacaat ttggtttccg gtgttccttc 1680 tcacatgaag gcgactcatg tgtggtctgt ttttgtcgga aatcttgcat tcccatcttg 1740 cctcaacgtc aatgagtgtg ttaacgagtt acttgttaat cacatggaaa tgatggaaga 1800 gacaaagaag gaagaaacac gtcaacaggc ctttaaggat gccagagatc gtgctctgat 1860 gacgatagcg aaagctattg agaaagatca aactatcaaa gatggtttgt taccgattct 1920 tgacctttgt aaaattaaag aagaattgac ggcggcctcg aattccttga gcttgactcc 1980 agaggccatt gaacaaacag attcgagatt gatgaaagcc tccggaagcg acgtcaatcc 2040 atatgccgat tcgataaaag aagccatcca ttactttaat gaagtggaag tggctaacac 2100 gagaaatctt cgcagtctgg gaatttatct tggatggtct attcccaaga ataaacagac 2160 ttacgatgcc ctacagggta ggaatgaatc tgtcagggtg tatgtaccat atgaaaataa 2220 atggtacccc tctgcaccca ccagtcagta tgaaagggct atgactgttg atgggtattt 2280 ttcgcttcca atggaattcg aagcgattac cgacggttgt agacgtgaga tatccaaata 2340 ccacctcttg gttgtcgatg attcgtgtat tttctgttca ggtcagagaa tgatcccagc 2400 tttagaagct gccttgaaac tggtcccaac ctttaaaatc acaattgttg atggtgtcgc 2460 gggttgtgga aagactacac atctgaagaa gattgcacgc attgattcaa gcgctgcagg 2520 tagtcctgat ctggtactga cgagtaatcg tagttcatca gatgagctca aagaagttat 2580 cgactgtcct gatgtgatga aataccgcat tagaacggtc gatagttatt tgatgctcaa 2640 atcctggttt tcggctgagc gtctattgtt tgatgaatgc ttcttgacgc atgcgggttg 2700 cgtgtatgca gcagccactc tggctcaggt gaaagaagta attgcttttg gtgacacaga 2760 gcaagttcct ttcatatcta gattaccaga gtttcgcatg gaacatcata aggttaaagg 2820 gaagatatca tgtacaaccg accacttaca gatgtccaag agatgccaca gcttgtttaa 2880 agaaaatttt ctacaaaaac aagactgtga agtcagcgag cgttgttcat cgctcgctga 2940 attgtgccca attcaaagtg tgattcaaat tcaaccggag cgtgatgttt tgtacatgac 3000 acacacgcga gcagataagg agaccctgat gagaattccc gggatgccga aagacaggat 3060 aaaaaccact catgaagccc aaggagaaac ctgggatcat gtggtaatgt ttcgtctgtc 3120 gaagactaca aatctgctac attcgggtaa gggacctgat ttaggtccat gtcacaattt 3180 ggttgccata tctagacatc ggaaatcatt taggtacttt acagttgcgc ctcatgataa 3240 cgatgatcag atagtgaagt gtatcaatta cgctagatcc ttaagttcag gggatttaga 3300 cggggttcgt gttttaattt gatacaatat gtttaatgta ctccctctat agagagttgc 3360 cgcagatttt ctgcgaagtt tcggaactgt attttgccgg tggataggcg ggtgtagtgc 3420 ttctccaaca cacttccact gatgctgttt atatctaatg atataaacaa tgcctccttt 3480 aaaggagatg c 3491 //