ID X00729; SV 1; linear; genomic RNA; STD; VRL; 3481 BP. XX AC X00729; XX DT 20-FEB-1985 (Rel. 05, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Cowpea mosaic virus (CPMV) middle-component RNA (M RNA) XX KW capsid protein; polyprotein. XX OS Cowpea mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3481 RX PUBMED; 6641721. RA van Wezenbeek P.M.G.F., Verver J., Harmsen J., Vos P., van Kammen A.; RT "Primary structure and gene organization of the middle-component RNA of RT cowpea mosaic virus"; RL EMBO J. 2(6):941-946(1983). XX DR MD5; 2110bbdf897cdc53e0d7dff0f039fb13. DR EuropePMC; PMC108533; 9712795. XX FH Key Location/Qualifiers FH FT source 1..3481 FT /organism="Cowpea mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12264" FT CDS <114..224 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:Q66169" FT /protein_id="CAA25316.1" FT /translation="HERSSTLSDRASAPVQCFLSLKRNQRSLCGHVVRRH" FT CDS 161..3301 FT /note="precursor polypeptide" FT /db_xref="GOA:P03599" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1NY7" FT /db_xref="PDB:2BFU" FT /db_xref="PDB:5A32" FT /db_xref="PDB:5A33" FT /db_xref="PDB:5FMO" FT /db_xref="UniProtKB/Swiss-Prot:P03599" FT /protein_id="CAA25314.1" FT /translation="MFSFTEAKSKISLWTRSAAPLNNVYLSYSCRCGLGKRKLAGGCCS FT APYITCYDSADFRRVQYLYFCLTRYCCLYFFLLLLADWFYKKSSIFFETEFSRGFRTWR FT KIVKLLYILPKFEMESIMSRGIPSGILEEKAIQFKRAKEGNKPLKDEIPKPEDMYVSHT FT SKWNVLRKMSQKTVDLSKAAAGMGFINKHMLTGNILAQPTTVLDIPVTKDKTLAMASDF FT IRKENLKTSAIHIGAIEIIIQSFASPESDLMGGFLLVDSLHTDTANAIRSIFVAPMRGG FT RPVRVVTFPNTLAPVSCDLNNRFKLICSLPNCDIVQGSQVAEVSVNVAGCATSIEKSHT FT PSQLYTEEFEKEGAVVVEYLGRQTYCAQPSNLPTEEKLRSLKFDFHVEQPSVLKLSNSC FT NAHFVKGESLKYSISGKEAENHAVHATVVSREGASAAPKQYDPILGRVLDPRNGNVAFP FT QMEQNLFALSLDDTSSVRGSLLDTKFAQTRVLLSKAMAGGDVLLDEYLYDVVNGQDFRA FT TVAFLRTHVITGKIKVTATTNISDNSGCCLMLAINSGVRGKYSTDVYTICSQDSMTWNP FT GCKKNFSFTFNPNPCGDSWSAEMISRSRVRMTVICVSGWTLSPTTDVIAKLDWSIVNEK FT CEPTIYHLADCQNWLPLNRWMGKLTFPQGVTSEVRRMPLSIGGGAGATQAFLANMPNSW FT ISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFGFYESFPHRIVQFAEVEEK FT CTLVFSQQEFVTAWSTQVNPRTTLEADGCPYLYAIIHDSTTGTISGDFNLGVKLVGIKD FT FCGIGSNPGIDGSRLLGAIAQGPVCAEASDVYSPCMIASTPPAPFSDVTAVTFDLINGK FT ITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQS FT MNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFEFAESPWANQTTWYLECVATNPRQI FT QQFEVNMRFDPNFRVAGNILMPPFPLSTETPPLLKFRFRDIERSKRSVMVGHTATAA" FT CDS 512..3301 FT /note="poss. precursor polypeptide" FT /db_xref="GOA:P03599" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1NY7" FT /db_xref="PDB:2BFU" FT /db_xref="PDB:5A32" FT /db_xref="PDB:5A33" FT /db_xref="PDB:5FMO" FT /db_xref="UniProtKB/Swiss-Prot:P03599" FT /protein_id="CAA25315.1" FT /translation="MESIMSRGIPSGILEEKAIQFKRAKEGNKPLKDEIPKPEDMYVSH FT TSKWNVLRKMSQKTVDLSKAAAGMGFINKHMLTGNILAQPTTVLDIPVTKDKTLAMASD FT FIRKENLKTSAIHIGAIEIIIQSFASPESDLMGGFLLVDSLHTDTANAIRSIFVAPMRG FT GRPVRVVTFPNTLAPVSCDLNNRFKLICSLPNCDIVQGSQVAEVSVNVAGCATSIEKSH FT TPSQLYTEEFEKEGAVVVEYLGRQTYCAQPSNLPTEEKLRSLKFDFHVEQPSVLKLSNS FT CNAHFVKGESLKYSISGKEAENHAVHATVVSREGASAAPKQYDPILGRVLDPRNGNVAF FT PQMEQNLFALSLDDTSSVRGSLLDTKFAQTRVLLSKAMAGGDVLLDEYLYDVVNGQDFR FT ATVAFLRTHVITGKIKVTATTNISDNSGCCLMLAINSGVRGKYSTDVYTICSQDSMTWN FT PGCKKNFSFTFNPNPCGDSWSAEMISRSRVRMTVICVSGWTLSPTTDVIAKLDWSIVNE FT KCEPTIYHLADCQNWLPLNRWMGKLTFPQGVTSEVRRMPLSIGGGAGATQAFLANMPNS FT WISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFGFYESFPHRIVQFAEVEE FT KCTLVFSQQEFVTAWSTQVNPRTTLEADGCPYLYAIIHDSTTGTISGDFNLGVKLVGIK FT DFCGIGSNPGIDGSRLLGAIAQGPVCAEASDVYSPCMIASTPPAPFSDVTAVTFDLING FT KITPVGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQ FT SMNPESYDARTFVISQPGSAMLNFSFDIIGPNSGFEFAESPWANQTTWYLECVATNPRQ FT IQQFEVNMRFDPNFRVAGNILMPPFPLSTETPPLLKFRFRDIERSKRSVMVGHTATAA" FT CDS 524..3301 FT /note="poss. precursor polypeptide" FT /db_xref="GOA:P03599" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1NY7" FT /db_xref="PDB:2BFU" FT /db_xref="PDB:5A32" FT /db_xref="PDB:5A33" FT /db_xref="PDB:5FMO" FT /db_xref="UniProtKB/Swiss-Prot:P03599" FT /protein_id="CAA25317.1" FT /translation="MSRGIPSGILEEKAIQFKRAKEGNKPLKDEIPKPEDMYVSHTSKW FT NVLRKMSQKTVDLSKAAAGMGFINKHMLTGNILAQPTTVLDIPVTKDKTLAMASDFIRK FT ENLKTSAIHIGAIEIIIQSFASPESDLMGGFLLVDSLHTDTANAIRSIFVAPMRGGRPV FT RVVTFPNTLAPVSCDLNNRFKLICSLPNCDIVQGSQVAEVSVNVAGCATSIEKSHTPSQ FT LYTEEFEKEGAVVVEYLGRQTYCAQPSNLPTEEKLRSLKFDFHVEQPSVLKLSNSCNAH FT FVKGESLKYSISGKEAENHAVHATVVSREGASAAPKQYDPILGRVLDPRNGNVAFPQME FT QNLFALSLDDTSSVRGSLLDTKFAQTRVLLSKAMAGGDVLLDEYLYDVVNGQDFRATVA FT FLRTHVITGKIKVTATTNISDNSGCCLMLAINSGVRGKYSTDVYTICSQDSMTWNPGCK FT KNFSFTFNPNPCGDSWSAEMISRSRVRMTVICVSGWTLSPTTDVIAKLDWSIVNEKCEP FT TIYHLADCQNWLPLNRWMGKLTFPQGVTSEVRRMPLSIGGGAGATQAFLANMPNSWISM FT WRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFGFYESFPHRIVQFAEVEEKCTL FT VFSQQEFVTAWSTQVNPRTTLEADGCPYLYAIIHDSTTGTISGDFNLGVKLVGIKDFCG FT IGSNPGIDGSRLLGAIAQGPVCAEASDVYSPCMIASTPPAPFSDVTAVTFDLINGKITP FT VGDDNWNTHIYNPPIMNVLRTAAWKSGTIHVQLNVRGAGVKRADWDGQVFVYLRQSMNP FT ESYDARTFVISQPGSAMLNFSFDIIGPNSGFEFAESPWANQTTWYLECVATNPRQIQQF FT EVNMRFDPNFRVAGNILMPPFPLSTETPPLLKFRFRDIERSKRSVMVGHTATAA" FT mat_peptide 1538..2662 FT /note="VP 37" FT mat_peptide 2660..3298 FT /note="VP 23" FT polyA_site 3481 FT /note="polyadenylation site" XX SQ Sequence 3481 BP; 911 A; 692 C; 773 G; 1105 T; 0 other; tattaaaatc ttaataggtt ttgataaaag cgaacgtggg gaaacccgaa ccaaaccttc 60 ttctaaattc tctctcatct ctcttaaagc aaacttctct cttgtctttc ttgcatgagc 120 gatcttcaac gttgtcagat cgtgcttcgg caccagtaca atgttttctt tcactgaagc 180 gaaatcaaag atctctttgt ggacacgtag tgcggcgcca ttaaataacg tgtacttgtc 240 ctattcttgt cggtgtggtc ttgggaaaag aaagcttgct ggaggctgct gttcagcccc 300 atacattact tgttacgatt ctgctgactt tcggcgggtg caatatctct acttctgctt 360 gacgaggtat tgttgcctgt acttctttct tcttcttctt gctgattggt tctataagaa 420 atctagtatt ttctttgaaa cagagttttc ccgtggtttt cgaacttgga gaaagattgt 480 taagcttctg tatattctgc ccaaatttga aatggaaagc attatgagcc gtggtattcc 540 ttcaggaatt ttggaggaaa aagctattca gttcaaacgt gccaaagaag ggaataaacc 600 cttgaaggat gagattccca agcctgagga tatgtatgtg tctcacactt ctaaatggaa 660 tgtgctcaga aaaatgagcc aaaagactgt ggatctttcc aaagcagctg ctgggatggg 720 attcatcaat aagcatatgc ttacgggcaa catcttggca caaccaacaa cagtcttgga 780 tattcccgtc acaaaggata aaacacttgc gatggccagt gattttattc gtaaggagaa 840 tctcaagact tctgccattc acattggagc aattgagatt attatccaga gctttgcttc 900 ccctgaaagt gatttgatgg gaggcttttt gcttgtggat tctttacaca ctgatacagc 960 taatgctatt cgtagcattt ttgttgctcc aatgcgggga ggaagaccag tcagagtggt 1020 gaccttccca aatacactgg cacctgtatc atgtgatctg aacaatagat tcaagctcat 1080 ttgctcattg ccaaactgtg atattgtcca gggtagccaa gtagcagaag tgagtgtaaa 1140 tgttgcagga tgtgctactt ccatagagaa atctcacacc ccttcccaat tgtatacaga 1200 ggaatttgaa aaggagggtg ctgttgttgt agaatactta ggcagacaga cctattgtgc 1260 tcagcctagc aatttaccca cagaagaaaa acttcggtcc cttaagtttg actttcatgt 1320 tgaacaacca agtgtcctga agttatccaa ttcctgcaat gcgcactttg tcaagggaga 1380 aagtttgaaa tactctattt ctggcaaaga agcagaaaac catgcagttc atgctactgt 1440 ggtctctcga gaaggggctt ctgcggcacc caagcaatat gatcctattt tgggacgggt 1500 gctggatcca cgaaatggga atgtggcttt tccacaaatg gagcaaaact tgtttgccct 1560 ttctttggat gatacaagct cagttcgtgg ttctttgctt gacacaaaat tcgcacaaac 1620 tcgagttttg ttgtccaagg ctatggctgg tggtgatgtg ttattggatg agtatctcta 1680 tgatgtggtc aatggacaag attttagagc tactgtcgct tttttgcgca cccatgttat 1740 aacaggcaaa ataaaggtga cagctaccac caacatttct gacaactcgg gttgttgttt 1800 gatgttggcc ataaatagtg gtgtgagggg taagtatagt actgatgttt atactatctg 1860 ctctcaagac tccatgacgt ggaacccagg gtgcaaaaag aacttctcgt tcacatttaa 1920 tccaaaccct tgtggggatt cttggtctgc tgagatgata agtcgaagca gagttaggat 1980 gacagttatt tgtgtttcgg gatggacctt atctcctacc acagatgtga ttgccaagct 2040 agactggtca attgtcaatg agaaatgtga gcccaccatt taccacttgg ctgattgtca 2100 gaattggtta ccccttaatc gttggatggg aaaattgact tttccccagg gtgtgacaag 2160 tgaggttcga aggatgcctc tttctatagg aggcggtgct ggtgcgactc aagctttctt 2220 ggccaatatg cccaattcat ggatatcaat gtggagatat tttagaggtg aacttcactt 2280 tgaagttact aaaatgagct ctccatatat taaagccact gttacatttc tcatagcttt 2340 tggtaatctt agtgatgcct ttggttttta tgagagtttt cctcatagaa ttgttcaatt 2400 tgctgaggtt gaggaaaaat gtactttggt tttctcccaa caagagtttg tcactgcttg 2460 gtcaacacaa gtaaacccca gaaccacact tgaagcagat ggttgtccct acctatatgc 2520 aattattcat gatagtacaa caggtacaat ctccggagat tttaatcttg gggtcaagct 2580 tgttggcatt aaggattttt gtggtatagg ttctaatccg ggtattgatg gttcccgctt 2640 gcttggagct atagcacaag gacctgtttg tgctgaagcc tcagatgtgt atagcccatg 2700 tatgatagct agcactcctc ctgctccatt ttcagacgtt acagcagtaa cttttgactt 2760 aatcaacggc aaaataactc ctgttggtga tgacaattgg aatacgcaca tttataatcc 2820 tccaattatg aatgtcttgc gtactgctgc ttggaaatct ggaactattc atgttcaact 2880 taatgttagg ggtgctggtg tcaaaagagc agattgggat ggtcaagtct ttgtttacct 2940 gcgccagtcc atgaaccctg aaagttatga tgcgcggaca tttgtgatct cacaacctgg 3000 ttctgccatg ttgaacttct cttttgatat catagggccg aatagcggat ttgaatttgc 3060 cgaaagccca tgggccaatc agaccacctg gtatcttgaa tgtgttgcta ccaatcccag 3120 acaaatacag caatttgagg tcaacatgcg cttcgatcct aatttcaggg ttgccggcaa 3180 tatcctgatg cccccatttc cactgtcaac ggaaactcca ccgttattaa agtttaggtt 3240 tcgggatatt gaacgctcca agcgtagtgt tatggttgga cacactgcta ctgctgctta 3300 actctggttt cattaaattt tctttagttt gaatttactg ttatttggtg tgcatttcta 3360 tgtttggtga gcggttttct gtgctcagag tgtgtttatt ttatgtaatt taatttcttt 3420 gtgagctcct gtttagcagg tcgtcccttc agcaaggaca caaaaagatt ttaattttat 3480 t 3481 //