ID X07441; SV 1; linear; genomic RNA; STD; VRL; 6318 BP. XX AC X07441; XX DT 22-NOV-1988 (Rel. 18, Created) DT 12-SEP-1993 (Rel. 36, Last updated, Version 4) XX DE Turnip yellow mosaic virus genome XX KW genome; overlapping genes; unidentified reading frame. XX OS Turnip yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6318 RA Morch M.; RT ; RL Submitted (22-APR-1988) to the INSDC. RL M Morch, Institut Jacques Monod, CNRS Universite Paris VII, 2 Place RL Jussieu, F 75251 Paris, France. XX RN [2] RP 1-6318 RX DOI; 10.1093/nar/16.13.6157. RX PUBMED; 3399388. RA Morch M.D., Boyer J.C., Haenni A.L.; RT "Overlapping open reading frames revealed by complete nucleotide sequencing RT of turnip yellow mosaic virus genomic RNA"; RL Nucleic Acids Res. 16(13):6157-6173(1988). XX DR MD5; 5e3c81d03071bbc5fcc66f9cc87ce43a. DR EuropePMC; PMC3583878; 23460860. DR EuropePMC; PMC4729751; 26843703. DR EuropePMC; PMC4968819; 27479078. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF00390; UPSK. XX CC Data kindly reviewed (19-DEC-1988) by MORCH M.-D. XX FH Key Location/Qualifiers FH FT source 1..6318 FT /organism="Turnip yellow mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12154" FT CDS 88..1974 FT /note="69K ORF (AA 1-628)" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/Swiss-Prot:P10357" FT /protein_id="CAA30321.1" FT /translation="MSNGLPISIGRPCTHDSQRSLSAPDSRIHSGFNSLLDTDLPMVHS FT EGTSTPTQLLRHPNIWFGNLPPPPRRPQDNRDFSPLHPLVFPGHHSQLRHVHETQQVQQ FT TCPGKLKLSGAEELPPAPQRQHSLPLHITRPSRFPHHFHARRPDVLPSVPDHGPVLXET FT KPRTSVRQPRSATRGPSFRPILLPKVVHVHDDPPHSSLRPRGSRSRQLQPTVRRPLLAP FT NQFHSPRQPPPLSDDPGILGPRPLAPHSTRDPPPRPITPGPSNTHXLRPLSVLPRXSPR FT RGLLPNPRRHRTSTGHIPPTTTSRPTGPPSRLQRPVHLYQSSPHTPNFRPSSIRKDALL FT QTGPRLGHLERLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRPY FT PLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGAPPPPRRLPSPAPRPQLPLRDLGR FT TPGFPTPPKTPTRTPESRITASPTDIAPLDSDPVLSVRTEVHAPERRTFMDPEALRSAL FT ASLPSPPRSVGIIHTAPQTVLPANPPSPTRHLPPTSPPWILQSPVGEDAIVDSEDDSIS FT SFHSHDFDSPSGPLRSQSPSRFRLHLRSPSTSSGIEPWSPASYDYGSAPDTD" FT CDS 95..5629 FT /note="206K ORF (AA 1-1844)" FT /db_xref="GOA:P10358" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="PDB:4A5U" FT /db_xref="PDB:5LW5" FT /db_xref="PDB:5LWA" FT /db_xref="UniProtKB/Swiss-Prot:P10358" FT /protein_id="CAA30322.1" FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKE FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLA FT QVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNL FT ERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRIN FT SIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPPTLMXSDLFRSYQEPRLDVV FT SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP FT DHDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILS FT FLTLLQRFLPLPIPLAEVKSITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRP FT ASPPHQKLPHALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQA FT SLVLLALSESSILLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPF FT TPTTSTAPPDRSEASLPPAFASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQN FT SDLALESSTSTEPPPPPIRSPDXTPSAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPL FT SIPHQDPTDSADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELH FT PRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQL FT SNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFS FT PGKRLLGSQPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNG FT FDGVLSLLDVSTGQRTGPXPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQL FT LKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMP FT RGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSY FT RIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQ FT GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMXPSSYVGGTNGSSAMFSDAFN FT NSLIIMDRYFPSLFPQLKLITSPLTTRGPKLNGATPSASPTHRSPNFHLPPHIPLSYDR FT DFVTVNPTLPDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYP FT GEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP FT TLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAEC FT ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA FT LMHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDY FT TAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD FT DNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHP FT LFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPE FT THVQYQSACFDFFCRRCPRHEKMLLDDSTPALSLLERITSSPRWLTKNAMYLLPAKLRL FT AITSLSQTQSFPESIEVSHAESELLHYVQ" FT misc_feature 5630..6049 FT /note="221Krt ORF (AA 1-140)" FT CDS 5644..6213 FT /note="CP ORF (AA 1-189)" FT /db_xref="GOA:P03608" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:1AUY" FT /db_xref="PDB:1W39" FT /db_xref="UniProtKB/Swiss-Prot:P03608" FT /protein_id="CAA30323.1" FT /translation="MEIDKELAPQDRTVTVATVLPAVPGPSPLTIKQPFQSEVLFAGTK FT DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTVGVCWVPANSPVTP FT AQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISITAQPTA FT PPASTCIITVSGTLSMHSPLITDTST" XX SQ Sequence 6318 BP; 1443 A; 2488 C; 1078 G; 1300 T; 9 other; gtaatcaact accaattcca gctctctttt gacaactggt cttataccca cttccgtaca 60 cttgcaaccc tcgtaagaca attgcaaatg agtaatggcc ttccaattag cattggacgc 120 ccttgcaccc acgactcaca gagatccctc tctgcacccg attctcgaat ccacagtgga 180 ttcaattcgc tcctcgatac agacctaccc atggtccatt ccgaaggaac ttctacccct 240 actcaactcc tacggcatcc caacatctgg tttgggaacc tcccaccacc cccacgccgc 300 ccacaagaca atcgagactt ttctcctttg cacccactgg tctttccagg ccaccactcc 360 cagctccgtc atgttcatga aacccagcaa gttcaacaaa cttgcccagg taaactcaaa 420 ctttcgggag ctgaagaact accgcctgca ccccaacgac agcactcgtt accccttcac 480 atcaccagac cttcccgttt tccccaccat tttcatgcac gacgccctga tgtattacca 540 tccgtcccag atcatggacc tgttcttrcg gaaaccaaac ctcgaacgtc tgtacgccag 600 cctcgtagtg ccacccgagg cccatctttc cgaccaatcc ttctacccaa agttgtacac 660 gtacacgacg acccgccaca ctcttcacta cgtcccagag ggtcacgaag ccggcagcta 720 caaccaaccg tccgacgccc actcttggct ccgaatcaat tccattcgcc tcggcaacca 780 ccacctctca gtgacgatcc tggaatcctg gggccccgtc cactcgctcc tcattcaacg 840 agggaccccc ccccccgacc catcactcca ggcccctcca acactcatgr cctcagacct 900 ctttcggtct taccaagarc ctcgcctcga cgtggtctcc ttccgaatcc ccgacgccat 960 cgaacttcca caggccacat tcctccaaca accacttcga gaccgactgg tcccccgagc 1020 cgtctacaac gccctgttca cctataccag agcagtccgc acactccgaa cttcagaccc 1080 agcagcattc gtaaggatgc actcctccaa accggaccac gattgggtca cctcgaacgc 1140 ctgggacaac ctgcaaacct tcgcacttct gaacgttccc ctccgaccaa acgtcgtcta 1200 ccacgttctt cagagcccaa tcgcctccct aagcctttac ctgaggcaac attggcgccg 1260 tcttaccgcc accgccgtcc ctatcctctc cttcctaacc ctcctgcagc gcttccttcc 1320 attgcctata cctctagcag aggtaaaatc catcacagcc ttccgaaggg agctttaccg 1380 aaagaaggag ccccaccacc ccctcgacgt cttccatctc cagcaccgcg tccgcaacta 1440 ccactccgcg atctcggccg tacgcccggc ttccccaccc caccaaaaac tcccacacgc 1500 actccagaaa gccgcattac tgcttctccg accgatatcg cccctcttga cagcgacccc 1560 gttctttcgg tccgaacaga agtccatgct cccgaacgcc gaactttcat ggaccctgaa 1620 gcgcttcgct ctgccctggc aagcctccct agtcctcctc gctctgtcgg aatcatccat 1680 actgctccac aaactgttct ccccgccaac cctccaagcc caacacgaca cctaccaccg 1740 acatctccac cctggatcct acagtctcca gtgggagagg acgccattgt cgattccgag 1800 gacgacagca tttcttcctt tcactcccac gacttcgaca gcccctccgg accgctccga 1860 agccagtctc cctcccgctt tcgcctccac cttcgttccc cgtccacctc cagcggcatc 1920 gagccctgga gcccagcctc ctacgactac ggcagcgccc ccgacaccga ttgaacccac 1980 ccaacgcacc catcaaaatt ctgacctcgc gctcgaaagt tcaacctcaa ccgaacctcc 2040 cccacccccc atccgatccc ccgacaygac gccctccgcc cccgtccttt tcccagaaat 2100 caactcacct cgtcgttttc ccccccaact tcccgccacg cccgatctcg aacccgccca 2160 cactccaccc cctctttcca tcccgcacca agatccgact gactcagcgg accccctcat 2220 gggctcccac cttttgcacc attcactgcc tgcacccccc acccaccccc ttccatcttc 2280 acagctgtta cccgcacctt taacgaacga ccccactgcg atcggcccgg tgctcccctt 2340 tgaagaactc cacccacgca ggtaccctga aaacaccgcc actttcctca cgaggctccg 2400 ttcactccca tcaaaccatc ttccacaacc caccttgaat tgtcttctct ccgctgtctc 2460 cgaccaaacc aaggtttccg aggagcacct ctgggagtcc ctacagacaa ttctcccaga 2520 cagccaactc agcaatgaag agaccaacac tctcgggctt tcaactgaac acctcactgc 2580 gttggcccac ctttacaact tccaggcaac cgtttactcc gatcgcggcc ccatcctctt 2640 cggcccctcc gacaccatca agaggataga catcacccac accaccggac cgccatccca 2700 cttttcaccc ggcaaaagac tcctaggcag ccaaccctcc gctaagggcc atccctccga 2760 cccactcatc agagccatga agtctttcaa agtatccggc aactaccttc ccttctctga 2820 ggcccacaac catcccacct ccatctcaca cgccaagaac ttgatttcaa acatgaagaa 2880 tggtttcgac ggcgtcctct ccctcctcga cgtctccacg ggccaacgaa ccggacccrc 2940 ccccaaagaa cggatcatcc agatagacca ctaccttgac accaaccccg gcaaaaccac 3000 tcctgtggtg catttcgctg gcttcgctgg ctgtgggaag acatatccga tccaacagct 3060 cctcaaaacc aaactgttca aagacttccg ggtctcttgc cctaccacag aactcagaac 3120 cgaatggaag acagcgatgg aactccacgg ctcccagtca tggcgcttta acacttggga 3180 gtcttccatt ctcaagtcat ccagaatcct ggtcattgat gagatctaca aaatgccaag 3240 agggtacctc gacctttcca tcctcgccga ccccgccctc gagctcgtca taattctcgg 3300 cgatcctctm cagggcgagt accactccca atcgaaagac tcatccaacc accgccttcc 3360 ctctgaaact ctcaggctgc taccatacat cgacatgtac tgctggtgga gttaccgcat 3420 tcctcaatgc atcgcccgac tcttccaaat tcacagcttc aatgcctggc aaggagttat 3480 cgggtccgtt tccactcccc atgatcaatc ccccgtcctc accaacagtc atgcctcatc 3540 tcttaccttc aacagcctgg gatatcgctc ctgcacgatc agctctagcc aaggcctcac 3600 attctgcgac cccgccataa tcgtcctgga caactacacc aagtggctct cctcggctaa 3660 cggcctcgtc gccctcactc gatccagatc aggcgtccaa ttcatgkgcc cctcttccta 3720 cgtcggggga accaacggct cttccgccat gttttccgac gccttcaaca acagcctcat 3780 catcatggat cgctacttcc catccctgtt cccgcaactc aagctcatca cctcccccct 3840 cacaactcgc ggccccaaac tcaacggggc cacccccagc gcatccccca cccaccgttc 3900 gccaaacttc caccttcccc cacacattcc gctctcctat gatcgtgatt ttgttacggt 3960 gaacccaact ctccccgacc aaggacccga aacaagactc gacacccact ttctcccacc 4020 gtctcggctc cctctccatt tcgatctccc accggctatc accccacccc cggtttccac 4080 aagcgtcgac ccgccacaag cgaaagctag ccccgtctac ccaggcgagt tcttcgattc 4140 tctggcggcg ttcttcttac cagcacacga cccatcaaca agggaaatac tccacaaaga 4200 tcaatctagc aaccagttcc cctggttcga ccgacccttc agcctgtcct gccagccctc 4260 aagtctgatt tccgccaagc atgcacccaa ccatgatccg acccttctac cggcctccat 4320 caacaaacgc ttgcgattca gacccagtga ctcaccgcac caaatcaccg cggacgacgt 4380 ggtcctaggc ctgcaactct ttcactctct ttgtcgcgcc tactcacgtc aacccaacag 4440 caccgttcca ttcaaccctg aacttttcgc agaatgcatc tctctgaatg agtacgcaca 4500 gctcagttcc aaaacccaat ccaccatagt ggccaacgct tcacgctccg acccagactg 4560 gcgacacacc accgtcaaga tcttcgcgaa agcccaacac aaagtcaacg acggctccat 4620 cttcggctcg tggaaagcct gccagaccct cgcactcatg cacgactacg tgattctggt 4680 tcttggaccc gtcaagaaat accagagaat cttcgacaac gctgaccggc cacctaacat 4740 ctactcacac tgcggcaaga cacccaacca acttcgagat tggtgccagg aacatctcac 4800 tcattccacc cccaaaatcg caaacgacta caccgctttc gaccagtccc agcatggaga 4860 atccgtggtc cttgaagccc tcaaaatgaa gagactgaac attccragcc atctgattca 4920 gctccacgtc cacctcaaga ccaacgtctc cacccagttc ggccccctca catgcatgcg 4980 cctaaccggg gaacccggaa cttacgacga caacactgac tataacctcg cagtcatcta 5040 ctcccagtat gacgtcggtt cctgccccat catggtttct ggcgacgact cactcataga 5100 ccaccccctt cccactcgcc acgactggcc atccgttctc aaacgcctcc acctccgctt 5160 caaacttgaa ctcacctctc accccctctt ctgtggctac tacgtcggtc cagccggctg 5220 catccgcaac cccctggccc ttttctgcaa gctcatgatc gccgtggacg acgacgccct 5280 cgacgaccga cgactcagct acctcaccga gttcaccacc ggacacctcc ttggcgaatc 5340 actgtggcac ctcctccctg aaacccatgt tcagtatcag tcagcctgct ttgacttctt 5400 ctgcaggcgg tgcccaagac acgagaaaat gctcctcgac gactccacac ccgcactcag 5460 cctcctcgaa cgaatcactt cttcgccgag gtggctcacc aaaaatgcca tgtacctcct 5520 ccctgccaag ctacgactgg ccatcacctc tctatctcaa acgcagtcct tcccagaatc 5580 catcgaggtt tcccacgctg agtctgaatt gcttcactac gtccaatagc aatcagcccc 5640 aacatggaaa tcgacaaaga actcgccccc caagaccgca ccgtcaccgt cgccaccgtc 5700 ctaccagctg tccccggccc atcacctctc accatcaaac aaccgttyca gtctgaagtt 5760 ctatttgctg gaaccaaaga tgccgaggct tctctcacca tcgccaacat cgacagcgtt 5820 tccaccctca ccaccttcta ccgtcatgca tctctggaat cactctgggt cactatccat 5880 cccaccttgc aagccccagc tttcccgacc acggtcggtg tctgctgggt acccgccaat 5940 tctccagtca ctcccgccca aatcaccaag acctatggtg gccagatctt ctgcattggc 6000 ggcgccatca acaccctctc acctctcatc gtcaagtgcc cacttgaaat gatgaacccc 6060 cgggtcaagg attcgattca gtaccttgac tcgcccaaac tcctcatctc catcaccgct 6120 caacccaccg ctccccccgc atcgacctgc ataataactg tatcaggaac tctctcgatg 6180 cactctccgc tcatcacgga cacttccacc taagttctcg atctttaaaa tcgttagctc 6240 gccagttagc gaggtctgtc cccacacgac agataatcgg gtgcaactcc cgcccctctt 6300 ccgagggtca tcggaacc 6318 //