S-BIAD634alpha

An annotated fluorescence image dataset for training nuclear segmentation methods

Released: 2023-03-07
By: Sabine Taschner-Mandl, Inge M. Ambros, Peter F. Ambros, Klaus Beiske, Allan Hanbury, Wolfgang Doerr, Tamara Weiss, Maria Berneder, Magdalena Ambros, Eva Bozsaky, Florian Kromp, Teresa Zulueta-Coarasa

In a nutshell

  • 388 images
  • 388 annotations
  • Study size: 472.2MiB
  • Filetype breakdown:
    • .jpg: 79 (16.6MiB)
    • .png: 115 (1.5MiB)
    • .svg: 79 (4.1MiB)
    • .tif: 194 (450.0MiB)
    • .txt: 1 (3.1KiB)
  • License : CC0

This dataset has

  • segmentation masks
  • test data
  • training data
  • ground truth annotations
Example image for this dataset
Example image for this dataset
Example annotation for this dataset
Example annotation for this dataset

Study Information

Study Summary
Ground-truth annotated fluorescence image dataset for training nuclear segmentation methods
Organism
Homo sapiens
Imaging type
confocal fluorescence microscopy

Viewable images Images that have been converted to ome-ngff for in-browser viewing

Annotations Annotation in the context of AI, is the task of marking up data, such as images, so it can be recognised by models and used to make predictions.

  • Annotation type(s):Click on the Annotation type(s) to go to the page with a glossary segmentation masks
  • Annotation method(s): human(expert)

Models Models can mean two things: models that are used to derive the annotations in this study, OR this dataset is used to train these models

Deep Learning models trained with this dataset : https://github.com/perlfloccri/NuclearSegmentationPipeline

All images All images in the study in their original format

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