S-BIAD634alpha
An annotated fluorescence image dataset for training nuclear segmentation methods
Released: 2023-03-07By: Sabine Taschner-Mandl, Inge M. Ambros, Peter F. Ambros, Klaus Beiske, Allan Hanbury, Wolfgang Doerr, Tamara Weiss, Maria Berneder, Magdalena Ambros, Eva Bozsaky, Florian Kromp, Teresa Zulueta-Coarasa
On this page
In a nutshell
- 388 images
- 388 annotations
- Study size: 472.2MiB
- Filetype breakdown:
- .jpg: 79 (16.6MiB)
- .png: 115 (1.5MiB)
- .svg: 79 (4.1MiB)
- .tif: 194 (450.0MiB)
- .txt: 1 (3.1KiB)
- License : CC0
This dataset has
- segmentation masks
- test data
- training data
- ground truth annotations
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Study Summary
Ground-truth annotated fluorescence image dataset for training nuclear segmentation methods
Organism
Homo sapiens
Imaging type
confocal fluorescence microscopy
Viewable images Images that have been converted to ome-ngff for in-browser viewing
Showing 1 to 8 of 8 entries
Annotations Annotation in the context of AI, is the task of marking up data, such as images, so it can be recognised by models and used to make predictions.
- Annotation type(s):Click on the Annotation type(s) to go to the page with a glossary segmentation masks
- Annotation method(s): human(expert)
Annotation ID | Corresponding Image ID | Download Size | Actions |
---|---|---|---|
AN1 | IM45 | 2.1MiB | Download |
AN2 | IM28 | 2.1MiB | Download |
AN3 | IM114 | 2.7MiB | Download |
AN4 | IM149 | 2.1MiB | Download |
AN5 | IM35 | 2.1MiB | Download |
AN6 | IM314 | 2.1MiB | Download |
AN7 | IM312 | 2.7MiB | Download |
AN8 | IM30 | 2.1MiB | Download |
AN9 | IM85 | 2.1MiB | Download |
AN10 | IM331 | 462.3KiB | Download |
Showing 1 to 10 of 388 entries
Models Models can mean two things: models that are used to derive the annotations in this study, OR this dataset is used to train these models
Deep Learning models trained with this dataset : https://github.com/perlfloccri/NuclearSegmentationPipeline
All images All images in the study in their original format
Image ID | Corresponding Annotation ID | Filename | Download Size | Actions |
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Image ID | Corresponding Annotation ID | Filename | Download Size | Actions |
---|---|---|---|---|
IM1 | dataset/groundtruth/normal_25.tif | 2.5MiB | Download | |
IM2 | dataset/visualized_groundtruth/normal_33.png | 13.5KiB | Download | |
IM4 | dataset/visualized_groundtruth/otherspecimen_2.png | 28.6KiB | Download | |
IM5 | dataset/groundtruth/normal_40.tif | 2.7MiB | Download | |
IM5 | dataset/visualized_singlecell_groundtruth/normal_34_singlemask.png | 8.2KiB | Download | |
IM6 | AN45, AN168, AN169, AN318 | dataset/rawimages/normal_23.tif | 1.3MiB | Download |
IM6 | AN16, AN110, AN111, AN245, AN289, AN360 | dataset/rawimages/Neuroblastoma_13.tif | 1.3MiB | Download |
IM8 | AN46, AN170, AN171, AN319 | dataset/rawimages/normal_24.tif | 1.3MiB | Download |
IM8 | AN73, AN224, AN225, AN267, AN346, AN382 | dataset/rawimages/otherspecimen_3.tif | 776.5KiB | Download |
IM9 | AN67, AN212, AN213, AN340 | dataset/rawimages/normal_7.tif | 1.3MiB | Download |
Showing 1 to 10 of 388 entries