Supporting Tools and Websites

Metadata

Metadata extraction software:

• Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications Documentation and download here

• MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text Documentation and download here

• MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community

Data Analysis

Bia-binder: Run Jupyter Notebooks and experiment directly on the BioImageArchive

Organisations

EuroBioimaging

QUAREP-LiMi: Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy

Global BioImaging

In the future, capabilities will be available to connect other added-value resources that aim to enhance the scientific value of the archived images through curation, integrative analysis and the development of new analytical methods. Please write to bioimage-archive@ebi.ac.uk to discuss your ideas or subscribe to the mailing list.