CHEBI:60380 - α-D-Kdo-(2→8)-α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-β-D-GlcNAc-4P-(1→6)-α-D-GlcNAc

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name α-D-Kdo-(2→8)-α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-β-D-GlcNAc-4P-(1→6)-α-D-GlcNAc
ChEBI ID CHEBI:60380
ChEBI ASCII Name alpha-D-Kdo-(2->8)-alpha-D-Kdo-(2->4)-alpha-D-Kdo-(2->6)-beta-D-GlcNAc-4P-(1->6)-alpha-D-GlcNAc
Definition An amino pentasaccharide epitope consisting of three 3-deoxy-D-manno-oct-2-ulose residues and two N-acetylglucosamine residues (one at the reducing end) in a linear sequence, with one phosphate group attached.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C40H65N2O35P
Net Charge 0
Average Mass 1164.91030
Monoisotopic Mass 1164.31055
InChI InChI=1S/C40H65N2O35P/c1-11(45)41-21-27(56)25(54)19(71-33(21)58)9-68-34-22(42-12(2)46)28(57)32(77-78(65,66)67)20(72-34)10-70-39(36(61)62)5-18(26(55)30(75-39)16(50)7-44)73-40(37(63)64)4-14(48)24(53)31(76-40)17(51)8-69-38(35(59)60)3-13(47)23(52)29(74-38)15(49)6-43/h13-34,43-44,47-58H,3-10H2,1-2H3,(H,41,45)(H,42,46)(H,59,60)(H,61,62)(H,63,64)(H2,65,66,67)/t13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33+,34-,38-,39-,40-/m1/s1
InChIKey FXNWSVWYSNMUGI-HDORSMDSSA-N
SMILES [H][C@@]1(O[C@@](C[C@@H](O)[C@H]1O)(OC[C@@H](O)[C@@]1([H])O[C@@](C[C@@H](O)[C@H]1O)(O[C@@H]1C[C@@](OC[C@H]2O[C@@H](OC[C@H]3O[C@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]3O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2OP(O)(O)=O)(O[C@]([H])([C@H](O)CO)[C@@H]1O)C(O)=O)C(O)=O)C(O)=O)[C@H](O)CO
Roles Classification
Biological Role(s): epitope
The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing α-D-Kdo-(2→8)-α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-β-D-GlcNAc-4P-(1→6)-α-D-GlcNAc (CHEBI:60380) has role epitope (CHEBI:53000)
α-D-Kdo-(2→8)-α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-β-D-GlcNAc-4P-(1→6)-α-D-GlcNAc (CHEBI:60380) is a amino pentasaccharide (CHEBI:59268)
α-D-Kdo-(2→8)-α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-β-D-GlcNAc-4P-(1→6)-α-D-GlcNAc (CHEBI:60380) is a glucosamine oligosaccharide (CHEBI:22485)
IUPAC Name
3-deoxy-α-D-manno-oct-2-ulopyranonosyl-(2→8)-3-deoxy-α-D-manno-oct-2-ulopyranonosyl-(2→4)-3-deoxy-α-D-manno-oct-2-ulopyranonosyl-(2→6)-2-acetamido-2-deoxy-4-O-phosphono-β-D-glucopyranosyl-(1→6)-2-acetamido-2-deoxy-1-α-D-glucopyranose
Synonym Source
Kdo(2→8)Kdo(2→4)Kdo(2→6)GlcNAc4P(1→6)GlcNAcol ChEBI
Citation Waiting for Citations Type Source
20000757 PubMed citation Europe PMC
Last Modified
20 May 2020