CHEBI:76703 - 5'-AsGsCsCsGsCsGsAsCsTsTsCsTsAsGsAsCsT-3'

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name 5'-AsGsCsCsGsCsGsAsCsTsTsCsTsAsGsAsCsT-3'
ChEBI ID CHEBI:76703
Definition A phosphorothioate oligonucleotide consisting of four deoxyguanosine, six deoxycytidine, four deoxyadenosine and four thymidine residues connected by 3'→5' phosphorothioate linkages in the sequence A-G-C-C-G-C-G-A-C-T-T-C-T-A-G-A-C-T.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C174H222N66O91P18S18
Net Charge 0
Average Mass 5828.71000
Monoisotopic Mass 5824.50227
InChI InChI=1S/C174H222N66O91P18S18/c1-69-35-229(171(256)219-153(69)242)121-18-74(314-332(260,261)350)92(303-121)40-279-334(263,352)316-75-19-115(223-11-5-109(175)205-165(223)250)299-95(75)43-283-343(272,361)325-84-28-126(234-62-198-134-142(182)190-58-194-146(134)234)309-104(84)52-292-349(278,367)331-90-34-132(240-68-204-140-152(240)214-164(188)218-160(140)249)313-108(90)56-295-347(276,365)327-86-30-128(236-64-200-136-144(184)192-60-196-148(136)236)307-102(86)50-290-342(271,360)324-83-27-124(232-38-72(4)156(245)222-174(232)259)305-100(83)48-288-336(265,354)318-77-21-117(225-13-7-111(177)207-167(225)252)298-94(77)42-282-340(269,358)322-81-25-122(230-36-70(2)154(243)220-172(230)257)306-101(81)49-289-341(270,359)323-82-26-123(231-37-71(3)155(244)221-173(231)258)304-99(82)47-287-337(266,355)319-78-22-118(226-14-8-112(178)208-168(226)253)300-96(78)44-284-344(273,362)326-85-29-127(235-63-199-135-143(183)191-59-195-147(135)235)308-103(85)51-291-348(277,366)330-89-33-131(239-67-203-139-151(239)213-163(187)217-159(139)248)312-107(89)55-294-339(268,357)321-80-24-120(228-16-10-114(180)210-170(228)255)302-98(80)46-286-346(275,364)329-88-32-130(238-66-202-138-150(238)212-162(186)216-158(138)247)311-106(88)54-293-338(267,356)320-79-23-119(227-15-9-113(179)209-169(227)254)297-93(79)41-281-335(264,353)317-76-20-116(224-12-6-110(176)206-166(224)251)301-97(76)45-285-345(274,363)328-87-31-129(237-65-201-137-149(237)211-161(185)215-157(137)246)310-105(87)53-280-333(262,351)315-73-17-125(296-91(73)39-241)233-61-197-133-141(181)189-57-193-145(133)233/h5-16,35-38,57-68,73-108,115-132,241H,17-34,39-56H2,1-4H3,(H,262,351)(H,263,352)(H,264,353)(H,265,354)(H,266,355)(H,267,356)(H,268,357)(H,269,358)(H,270,359)(H,271,360)(H,272,361)(H,273,362)(H,274,363)(H,275,364)(H,276,365)(H,277,366)(H,278,367)(H2,175,205,250)(H2,176,206,251)(H2,177,207,252)(H2,178,208,253)(H2,179,209,254)(H2,180,210,255)(H2,181,189,193)(H2,182,190,194)(H2,183,191,195)(H2,184,192,196)(H,219,242,256)(H,220,243,257)(H,221,244,258)(H,222,245,259)(H2,260,261,350)(H3,185,211,215,246)(H3,186,212,216,247)(H3,187,213,217,248)(H3,188,214,218,249)/t73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91+,92+,93+,94+,95+,96+,97+,98+,99+,100+,101+,102+,103+,104+,105+,106+,107+,108+,115+,116+,117+,118+,119+,120+,121+,122+,123+,124+,125+,126+,127+,128+,129+,130+,131+,132+,333?,334?,335?,336?,337?,338?,339?,340?,341?,342?,343?,344?,345?,346?,347?,348?,349?/m0/s1
InChIKey SVTKGMRDDNPLBL-ZDDQPSDESA-N
SMILES Cc1cn([C@H]2C[C@H](OP(O)(S)=O)[C@@H](COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3COP(S)(=O)O[C@H]3C[C@@H](O[C@@H]3CO)n3cnc4c(N)ncnc34)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c(N)ncnc34)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)O2)c(=O)[nH]c1=O
Roles Classification
Biological Role(s): antisense oligonucleotide
A synthetic oligonucleotide whose base sequence is complementary to a gene's messenger RNA (mRNA) and which will bind with the mRNA inactivating it.
antigen
Any substance that stimulates an immune response in the body, such as through antibody production or by presentation to a T-cell receptor after binding to a major histocompability complex (MHC).
View more via ChEBI Ontology
ChEBI Ontology
Outgoing 5'-AsGsCsCsGsCsGsAsCsTsTsCsTsAsGsAsCsT-3' (CHEBI:76703) has role antigen (CHEBI:59132)
5'-AsGsCsCsGsCsGsAsCsTsTsCsTsAsGsAsCsT-3' (CHEBI:76703) has role antisense oligonucleotide (CHEBI:76720)
5'-AsGsCsCsGsCsGsAsCsTsTsCsTsAsGsAsCsT-3' (CHEBI:76703) is a phosphorothioate oligonucleotide (CHEBI:76674)
Synonyms Sources
[All-PS]-d(AGCCGCGACTTCTAGACT) ChEBI
[PS]-5'-AGCCGCGACTTCTAGACT-3' ChEBI
d[APSGPSCPSCPSGPSCPSGPSAPSCPSTPSTPSCPSTPSAPSGPSAPSCPST] ChEBI
phosphorothioate-linked 5'-AGC CGC GAC TTC TAG ACT-3' ChEBI
phosphorothioate-linked 5'-AGCCGCGACTTCTAGACT-3' ChEBI
Citation Waiting for Citations Type Source
10199390 PubMed citation Europe PMC
Last Modified
16 December 2013