CHEBI:17562 - cytidine

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ChEBI Name cytidine
ChEBI ID CHEBI:17562
Definition A pyrimidine nucleoside in which cytosine is attached to ribofuranose via a β-N1-glycosidic bond.
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:14063, CHEBI:41704, CHEBI:41709, CHEBI:41649, CHEBI:41686, CHEBI:4053, CHEBI:23515
Supplier Information eMolecules:496210, Selleckchem:cytidine, ZINC000002583632
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Cytidine (symbol C or Cyd) is a nucleoside molecule that is formed when cytosine is attached to a ribose ring (also known as a ribofuranose) via a β-N1-glycosidic bond. Cytidine is a component of RNA. It is a white water-soluble solid that is only slightly soluble in ethanol.
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Formula C9H13N3O5
Net Charge 0
Average Mass 243.21674
Monoisotopic Mass 243.08552
InChI InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKey UHDGCWIWMRVCDJ-XVFCMESISA-N
SMILES Nc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1
Metabolite of Species Details
Mus musculus (NCBI:txid10090) Source: BioModels - MODEL1507180067 See: PubMed
Saccharomyces cerevisiae (NCBI:txid4932) Source: yeast.sf.net See: PubMed
Escherichia coli (NCBI:txid562) See: PubMed
Homo sapiens (NCBI:txid9606) See: DOI
Roles Classification
Biological Role(s): Escherichia coli metabolite
Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
Saccharomyces cerevisiae metabolite
Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae ).
human metabolite
Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
View more via ChEBI Ontology
ChEBI Ontology
Outgoing cytidine (CHEBI:17562) has functional parent cytosine (CHEBI:16040)
cytidine (CHEBI:17562) has role Escherichia coli metabolite (CHEBI:76971)
cytidine (CHEBI:17562) has role Saccharomyces cerevisiae metabolite (CHEBI:75772)
cytidine (CHEBI:17562) has role human metabolite (CHEBI:77746)
cytidine (CHEBI:17562) has role mouse metabolite (CHEBI:75771)
cytidine (CHEBI:17562) is a cytidines (CHEBI:23524)
Incoming 3'-deoxy-3',4'-didehydro-cytidine (CHEBI:156331) has functional parent cytidine (CHEBI:17562)
5-ethynylcytidine (CHEBI:228294) has functional parent cytidine (CHEBI:17562)
N4-hydroxycytidine (CHEBI:180654) has functional parent cytidine (CHEBI:17562)
cytidine residue (CHEBI:64656) is substituent group from cytidine (CHEBI:17562)
IUPAC Name
cytidine
Synonyms Sources
1-beta-D-Ribofuranosylcytosine HMDB
1β-D-ribofuranosylcytosine NIST Chemistry WebBook
4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE PDBeChem
4-amino-1-β-D-ribofuranosylpyrimidin-2(1H)-one ChEBI
4-amino-1β-D-ribofuranosyl-2(1H)-pyrimidinone NIST Chemistry WebBook
Cyd CBN
Cytidin ChEBI
Cytidine KEGG COMPOUND
cytidine UniProt
Cytosine riboside HMDB
cytosine-1beta-D-Ribofuranoside HMDB
Zytidin ChEBI
Manual Xrefs Databases
C00475 KEGG COMPOUND
CTN PDBeChem
Cytidine Wikipedia
CYTIDINE MetaCyc
D07769 KEGG DRUG
DB02097 DrugBank
HMDB0000089 HMDB
View more database links
Registry Numbers Types Sources
65-46-3 CAS Registry Number NIST Chemistry WebBook
65-46-3 CAS Registry Number ChemIDplus
84763 Gmelin Registry Number Gmelin
89173 Reaxys Registry Number Reaxys
Citations
Yoon SJ, Lyoo IK, Haws C, Kim TS, Cohen BM, Renshaw PF (2009)
Decreased glutamate/glutamine levels may mediate cytidine's efficacy in treating bipolar depression: a longitudinal proton magnetic resonance spectroscopy study.
Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 34, 1810-1818 [PubMed:19194376]
[show Abstract]
Aird SD (2005)
Taxonomic distribution and quantitative analysis of free purine and pyrimidine nucleosides in snake venoms.
Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology 140, 109-126 [PubMed:15621516]
[show Abstract]
Martinussen J, Wadskov-Hansen SL, Hammer K (2003)
Two nucleoside uptake systems in Lactococcus lactis: competition between purine nucleosides and cytidine allows for modulation of intracellular nucleotide pools.
Journal of bacteriology 185, 1503-1508 [PubMed:12591866]
[show Abstract]
Last Modified
20 December 2023