CHEBI:37945 - dibekacin

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ChEBI Name dibekacin
ChEBI ID CHEBI:37945
Definition A kanamycin that is kanamycin B lacking the 3- and 4-hydroxy groups on the 2,6-diaminosugar ring.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
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Formula C18H37N5O8
Net Charge 0
Average Mass 451.51528
Monoisotopic Mass 451.26421
InChI InChI=1S/C18H37N5O8/c19-4-6-1-2-7(20)17(28-6)30-15-8(21)3-9(22)16(14(15)27)31-18-13(26)11(23)12(25)10(5-24)29-18/h6-18,24-27H,1-5,19-23H2/t6-,7+,8-,9+,10+,11-,12+,13+,14-,15+,16-,17+,18+/m0/s1
InChIKey JJCQSGDBDPYCEO-XVZSLQNASA-N
SMILES NC[C@@H]1CC[C@@H](N)[C@H](O1)O[C@@H]1[C@@H](N)C[C@@H](N)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](N)[C@H]2O)[C@H]1O
Roles Classification
Biological Role(s): protein synthesis inhibitor
A compound, usually an anti-bacterial agent or a toxin, which inhibits the synthesis of a protein.
antibacterial agent
A substance (or active part thereof) that kills or slows the growth of bacteria.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via carbohydrate-containing antibiotic )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing dibekacin (CHEBI:37945) has functional parent kanamycin B (CHEBI:28098)
dibekacin (CHEBI:37945) has role antibacterial agent (CHEBI:33282)
dibekacin (CHEBI:37945) has role protein synthesis inhibitor (CHEBI:48001)
dibekacin (CHEBI:37945) is a kanamycins (CHEBI:24951)
Incoming dibekacin sulfate (CHEBI:31475) has functional parent dibekacin (CHEBI:37945)
IUPAC Name
(1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-α-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diamino-2,3,4,6-tetradeoxy-α-D-erythro-hexopyranoside
INN Source
dibekacin KEGG DRUG
Synonyms Sources
3',4'-Dideoxykanamycin B ChemIDplus
DKM KEGG DRUG
O-3-Amino-3-deoxy-alpha-D-glucopyranosyl-(1-4)-O-(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl-(1-6))-2-deoxy-L-streptamine ChemIDplus
Panamicin ChemIDplus
Manual Xrefs Databases
855 DrugCentral
CN101278900 Patent
CN101575354 Patent
D07811 KEGG DRUG
View more database links
Registry Numbers Types Sources
1441606 Reaxys Registry Number Reaxys
34493-98-6 CAS Registry Number ChemIDplus
Citations Waiting for Citations Types Sources
20922036 PubMed citation Europe PMC
20936279 PubMed citation Europe PMC
Last Modified
22 February 2017