EMD-10007

Single-particle
3.5 Å
EMD-10007 Deposition: 28/05/2019
Map released: 11/12/2019
Last modified: 22/05/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-10007

RNA Polymerase I Open Complex conformation 1

EMD-10007

Single-particle
3.5 Å
EMD-10007 Deposition: 28/05/2019
Map released: 11/12/2019
Last modified: 22/05/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Saccharomyces cerevisiae, synthetic construct
Sample: RNA Polymerase I Open Complex conformation 1
Fitted models: 6ruo (Avg. Q-score: 0.089)

Deposition Authors: Mueller CW, Sadian Y
Molecular insight into RNA polymerase I promoter recognition and promoter melting.
Sadian Y, Baudin F , Tafur L , Murciano B , Wetzel R, Weis F , Muller CW
(2019) Nat Commun , 10 , 5543 - 5543
PUBMED: 31804486
DOI: doi:10.1038/s41467-019-13510-w
ISSN: 2041-1723
Abstract:
RNA polymerase I (Pol I) assembles with core factor (CF) and Rrn3 on the rDNA core promoter for transcription initiation. Here, we report cryo-EM structures of closed, intermediate and open Pol I initiation complexes from 2.7 to 3.7 Å resolution to visualize Pol I promoter melting and to structurally and biochemically characterize the recognition mechanism of Pol I promoter DNA. In the closed complex, double-stranded DNA runs outside the DNA-binding cleft. Rotation of CF and upstream DNA with respect to Pol I and Rrn3 results in the spontaneous loading and opening of the promoter followed by cleft closure and positioning of the Pol I A49 tandem winged helix domain (tWH) onto DNA. Conformational rearrangement of A49 tWH leads to a clash with Rrn3 to initiate complex disassembly and promoter escape. Comprehensive insight into the Pol I transcription initiation cycle allows comparisons with promoter opening by Pol II and Pol III.