EMD-11926
Cryo-EM structure of human exostosin-like 3 (EXTL3) in complex with UDP
EMD-11926
Single-particle2.93 Å

Map released: 18/05/2022
Last modified: 23/10/2024
Sample Organism:
Homo sapiens
Sample: Homodimer of EXTL3 globular domain
Fitted models: 7aua (Avg. Q-score: 0.574)
Raw data: EMPIAR-11182
Deposition Authors: Wilson LFL
,
Dendooven T
Sample: Homodimer of EXTL3 globular domain
Fitted models: 7aua (Avg. Q-score: 0.574)
Raw data: EMPIAR-11182
Deposition Authors: Wilson LFL


The structure of EXTL3 helps to explain the different roles of bi-domain exostosins in heparan sulfate synthesis.
Wilson LFL
,
Dendooven T
,
Hardwick SW
,
Echevarria-Poza A,
Tryfona T
,
Krogh KBRM,
Chirgadze DY
,
Luisi BF
,
Logan DT
,
Mani K
,
Dupree P
(2022) Nat Commun , 13 , 3314 - 3314









(2022) Nat Commun , 13 , 3314 - 3314
Abstract:
Heparan sulfate is a highly modified O-linked glycan that performs diverse physiological roles in animal tissues. Though quickly modified, it is initially synthesised as a polysaccharide of alternating β-D-glucuronosyl and N-acetyl-α-D-glucosaminyl residues by exostosins. These enzymes generally possess two glycosyltransferase domains (GT47 and GT64)-each thought to add one type of monosaccharide unit to the backbone. Although previous structures of murine exostosin-like 2 (EXTL2) provide insight into the GT64 domain, the rest of the bi-domain architecture is yet to be characterised; hence, how the two domains co-operate is unknown. Here, we report the structure of human exostosin-like 3 (EXTL3) in apo and UDP-bound forms. We explain the ineffectiveness of EXTL3's GT47 domain to transfer β-D-glucuronosyl units, and we observe that, in general, the bi-domain architecture would preclude a processive mechanism of backbone extension. We therefore propose that heparan sulfate backbone polymerisation occurs by a simple dissociative mechanism.
Heparan sulfate is a highly modified O-linked glycan that performs diverse physiological roles in animal tissues. Though quickly modified, it is initially synthesised as a polysaccharide of alternating β-D-glucuronosyl and N-acetyl-α-D-glucosaminyl residues by exostosins. These enzymes generally possess two glycosyltransferase domains (GT47 and GT64)-each thought to add one type of monosaccharide unit to the backbone. Although previous structures of murine exostosin-like 2 (EXTL2) provide insight into the GT64 domain, the rest of the bi-domain architecture is yet to be characterised; hence, how the two domains co-operate is unknown. Here, we report the structure of human exostosin-like 3 (EXTL3) in apo and UDP-bound forms. We explain the ineffectiveness of EXTL3's GT47 domain to transfer β-D-glucuronosyl units, and we observe that, in general, the bi-domain architecture would preclude a processive mechanism of backbone extension. We therefore propose that heparan sulfate backbone polymerisation occurs by a simple dissociative mechanism.