EMD-11926

Single-particle
2.93 Å
EMD-11926 Deposition: 02/11/2020
Map released: 18/05/2022
Last modified: 23/10/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-11926

Cryo-EM structure of human exostosin-like 3 (EXTL3) in complex with UDP

EMD-11926

Single-particle
2.93 Å
EMD-11926 Deposition: 02/11/2020
Map released: 18/05/2022
Last modified: 23/10/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens
Sample: Homodimer of EXTL3 globular domain
Fitted models: 7aua (Avg. Q-score: 0.574)
Raw data: EMPIAR-11182

Deposition Authors: Wilson LFL , Dendooven T
The structure of EXTL3 helps to explain the different roles of bi-domain exostosins in heparan sulfate synthesis.
PUBMED: 35676258
DOI: doi:10.1038/s41467-022-31048-2
ISSN: 2041-1723
Abstract:
Heparan sulfate is a highly modified O-linked glycan that performs diverse physiological roles in animal tissues. Though quickly modified, it is initially synthesised as a polysaccharide of alternating β-D-glucuronosyl and N-acetyl-α-D-glucosaminyl residues by exostosins. These enzymes generally possess two glycosyltransferase domains (GT47 and GT64)-each thought to add one type of monosaccharide unit to the backbone. Although previous structures of murine exostosin-like 2 (EXTL2) provide insight into the GT64 domain, the rest of the bi-domain architecture is yet to be characterised; hence, how the two domains co-operate is unknown. Here, we report the structure of human exostosin-like 3 (EXTL3) in apo and UDP-bound forms. We explain the ineffectiveness of EXTL3's GT47 domain to transfer β-D-glucuronosyl units, and we observe that, in general, the bi-domain architecture would preclude a processive mechanism of backbone extension. We therefore propose that heparan sulfate backbone polymerisation occurs by a simple dissociative mechanism.