EMD-12272
lateral-open conformation of the wild-type BAM complex (BamABCDE) bound to a bactericidal Fab fragment
EMD-12272
Single-particle5.2 Å

Map released: 02/06/2021
Last modified: 20/11/2024
Sample Organism:
Escherichia coli K-12,
Homo sapiens
Sample: wild-type beta-barrel assembly machinery (BAM) complex (BamABCDE) bound by a bactericidal Fab fragment
Fitted models: 7nd0 (Avg. Q-score: 0.252)
Deposition Authors: Iadanza MG
Sample: wild-type beta-barrel assembly machinery (BAM) complex (BamABCDE) bound by a bactericidal Fab fragment
Fitted models: 7nd0 (Avg. Q-score: 0.252)
Deposition Authors: Iadanza MG
The role of membrane destabilisation and protein dynamics in BAM catalysed OMP folding.
White P,
Haysom SF
,
Iadanza MG,
Higgins AJ,
Machin JM
,
Whitehouse JM,
Horne JE
,
Schiffrin B,
Carpenter-Platt C,
Calabrese AN
,
Storek KM
,
Rutherford ST
,
Brockwell DJ
,
Ranson NA
,
Radford SE
(2021) Nat Commun , 12 , 4174 - 4174









(2021) Nat Commun , 12 , 4174 - 4174
Abstract:
The folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria is catalysed by the β-barrel assembly machinery (BAM). How lateral opening in the β-barrel of the major subunit BamA assists in OMP folding, and the contribution of membrane disruption to BAM catalysis remain unresolved. Here, we use an anti-BamA monoclonal antibody fragment (Fab1) and two disulphide-crosslinked BAM variants (lid-locked (LL), and POTRA-5-locked (P5L)) to dissect these roles. Despite being lethal in vivo, we show that all complexes catalyse folding in vitro, albeit less efficiently than wild-type BAM. CryoEM reveals that while Fab1 and BAM-P5L trap an open-barrel state, BAM-LL contains a mixture of closed and contorted, partially-open structures. Finally, all three complexes globally destabilise the lipid bilayer, while BamA does not, revealing that the BAM lipoproteins are required for this function. Together the results provide insights into the role of BAM structure and lipid dynamics in OMP folding.
The folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria is catalysed by the β-barrel assembly machinery (BAM). How lateral opening in the β-barrel of the major subunit BamA assists in OMP folding, and the contribution of membrane disruption to BAM catalysis remain unresolved. Here, we use an anti-BamA monoclonal antibody fragment (Fab1) and two disulphide-crosslinked BAM variants (lid-locked (LL), and POTRA-5-locked (P5L)) to dissect these roles. Despite being lethal in vivo, we show that all complexes catalyse folding in vitro, albeit less efficiently than wild-type BAM. CryoEM reveals that while Fab1 and BAM-P5L trap an open-barrel state, BAM-LL contains a mixture of closed and contorted, partially-open structures. Finally, all three complexes globally destabilise the lipid bilayer, while BamA does not, revealing that the BAM lipoproteins are required for this function. Together the results provide insights into the role of BAM structure and lipid dynamics in OMP folding.