EMD-13854
Cryo-em structure of the Nup98 fibril polymorph 4
EMD-13854
Helical reconstruction3.37 Å

Map released: 12/10/2022
Last modified: 17/07/2024
Sample Organism:
Homo sapiens
Sample: The nuclear pore complex protein Nup98 fibril polymorph 4
Fitted models: 7q67 (Avg. Q-score: 0.457)
Deposition Authors: Ibanez de Opakua A
,
Geraets JA
Sample: The nuclear pore complex protein Nup98 fibril polymorph 4
Fitted models: 7q67 (Avg. Q-score: 0.457)
Deposition Authors: Ibanez de Opakua A


Molecular interactions of FG nucleoporin repeats at high resolution.
Ibanez de Opakua A
,
Geraets JA
,
Frieg B,
Dienemann C,
Savastano A,
Rankovic M,
Cima-Omori MS
,
Schroder GF
,
Zweckstetter M
(2022) Nat Chem , 14 , 1278 - 1285





(2022) Nat Chem , 14 , 1278 - 1285
Abstract:
Proteins that contain repeat phenylalanine-glycine (FG) residues phase separate into oncogenic transcription factor condensates in malignant leukaemias, form the permeability barrier of the nuclear pore complex and mislocalize in neurodegenerative diseases. Insights into the molecular interactions of FG-repeat nucleoporins have, however, remained largely elusive. Using a combination of NMR spectroscopy and cryoelectron microscopy, we have identified uniformly spaced segments of transient β-structure and a stable preformed α-helix recognized by messenger RNA export factors in the FG-repeat domain of human nucleoporin 98 (Nup98). In addition, we have determined at high resolution the molecular organization of reversible FG-FG interactions in amyloid fibrils formed by a highly aggregation-prone segment in Nup98. We have further demonstrated that amyloid-like aggregates of the FG-repeat domain of Nup98 have low stability and are reversible. Our results provide critical insights into the molecular interactions underlying the self-association and phase separation of FG-repeat nucleoporins in physiological and pathological cell activities.
Proteins that contain repeat phenylalanine-glycine (FG) residues phase separate into oncogenic transcription factor condensates in malignant leukaemias, form the permeability barrier of the nuclear pore complex and mislocalize in neurodegenerative diseases. Insights into the molecular interactions of FG-repeat nucleoporins have, however, remained largely elusive. Using a combination of NMR spectroscopy and cryoelectron microscopy, we have identified uniformly spaced segments of transient β-structure and a stable preformed α-helix recognized by messenger RNA export factors in the FG-repeat domain of human nucleoporin 98 (Nup98). In addition, we have determined at high resolution the molecular organization of reversible FG-FG interactions in amyloid fibrils formed by a highly aggregation-prone segment in Nup98. We have further demonstrated that amyloid-like aggregates of the FG-repeat domain of Nup98 have low stability and are reversible. Our results provide critical insights into the molecular interactions underlying the self-association and phase separation of FG-repeat nucleoporins in physiological and pathological cell activities.