EMD-13987
Cryo-EM map of magnesium-bound EleNRMT in complex with two nanobodies at 4.1A
EMD-13987
Single-particle4.1 Å

Map released: 29/12/2021
Last modified: 23/10/2024
Sample Organism:
synthetic construct,
Eggerthella lenta
Sample: Magnesium-bound EleNRMT in complex with two nanobodies
Fitted models: 7qic (Avg. Q-score: 0.416)
Deposition Authors: Ramanadane K
,
Straub MS
Sample: Magnesium-bound EleNRMT in complex with two nanobodies
Fitted models: 7qic (Avg. Q-score: 0.416)
Deposition Authors: Ramanadane K


Structural and functional properties of a magnesium transporter of the SLC11/NRAMP family.
Abstract:
Members of the ubiquitous SLC11/NRAMP family catalyze the uptake of divalent transition metal ions into cells. They have evolved to efficiently select these trace elements from a large pool of Ca2+ and Mg2+, which are both orders of magnitude more abundant, and to concentrate them in the cytoplasm aided by the cotransport of H+ serving as energy source. In the present study, we have characterized a member of a distant clade of the family found in prokaryotes, termed NRMTs, that were proposed to function as transporters of Mg2+. The protein transports Mg2+ and Mn2+ but not Ca2+ by a mechanism that is not coupled to H+. Structures determined by cryo-EM and X-ray crystallography revealed a generally similar protein architecture compared to classical NRAMPs, with a restructured ion binding site whose increased volume provides suitable interactions with ions that likely have retained much of their hydration shell.
Members of the ubiquitous SLC11/NRAMP family catalyze the uptake of divalent transition metal ions into cells. They have evolved to efficiently select these trace elements from a large pool of Ca2+ and Mg2+, which are both orders of magnitude more abundant, and to concentrate them in the cytoplasm aided by the cotransport of H+ serving as energy source. In the present study, we have characterized a member of a distant clade of the family found in prokaryotes, termed NRMTs, that were proposed to function as transporters of Mg2+. The protein transports Mg2+ and Mn2+ but not Ca2+ by a mechanism that is not coupled to H+. Structures determined by cryo-EM and X-ray crystallography revealed a generally similar protein architecture compared to classical NRAMPs, with a restructured ion binding site whose increased volume provides suitable interactions with ions that likely have retained much of their hydration shell.