EMD-16106
Structure of the GroEL-ATP complex plunge-frozen 50 ms after mixing with ATP
EMD-16106
Single-particle2.7 Å

Map released: 09/08/2023
Last modified: 13/09/2023
Sample Organism:
Escherichia coli
Sample: GroEL in complex with ATP
Fitted models: 8blc (Avg. Q-score: 0.462)
Raw data: EMPIAR-11481
Deposition Authors: Dhurandhar M
,
Torino S
,
Efremov R
Sample: GroEL in complex with ATP
Fitted models: 8blc (Avg. Q-score: 0.462)
Raw data: EMPIAR-11481
Deposition Authors: Dhurandhar M



Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Torino S
,
Dhurandhar M
,
Stroobants A
,
Claessens R
,
Efremov RG
(2023) Nat Methods , 20 , 1400 - 1408





(2023) Nat Methods , 20 , 1400 - 1408
Abstract:
Single-particle cryogenic electron microscopy (cryo-EM) allows reconstruction of high-resolution structures of proteins in different conformations. Protein function often involves transient functional conformations, which can be resolved using time-resolved cryo-EM (trEM). In trEM, reactions are arrested after a defined delay time by rapid vitrification of protein solution on the EM grid. Despite the increasing interest in trEM among the cryo-EM community, making trEM samples with a time resolution below 100 ms remains challenging. Here we report the design and the realization of a time-resolved cryo-plunger that combines a droplet-based microfluidic mixer with a laser-induced generator of microjets that allows rapid reaction initiation and plunge-freezing of cryo-EM grids. Using this approach, a time resolution of 5 ms was achieved and the protein density map was reconstructed to a resolution of 2.1 Å. trEM experiments on GroEL:GroES chaperonin complex resolved the kinetics of the complex formation and visualized putative short-lived conformations of GroEL-ATP complex.
Single-particle cryogenic electron microscopy (cryo-EM) allows reconstruction of high-resolution structures of proteins in different conformations. Protein function often involves transient functional conformations, which can be resolved using time-resolved cryo-EM (trEM). In trEM, reactions are arrested after a defined delay time by rapid vitrification of protein solution on the EM grid. Despite the increasing interest in trEM among the cryo-EM community, making trEM samples with a time resolution below 100 ms remains challenging. Here we report the design and the realization of a time-resolved cryo-plunger that combines a droplet-based microfluidic mixer with a laser-induced generator of microjets that allows rapid reaction initiation and plunge-freezing of cryo-EM grids. Using this approach, a time resolution of 5 ms was achieved and the protein density map was reconstructed to a resolution of 2.1 Å. trEM experiments on GroEL:GroES chaperonin complex resolved the kinetics of the complex formation and visualized putative short-lived conformations of GroEL-ATP complex.