EMD-19139

Subtomogram averaging
36.0 Å
EMD-19139 Deposition: 14/12/2023
Map released: 25/12/2024
Last modified: 19/02/2025
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-19139

Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex

EMD-19139

Subtomogram averaging
36.0 Å
EMD-19139 Deposition: 14/12/2023
Map released: 25/12/2024
Last modified: 19/02/2025
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Dictyostelium discoideum AX2
Sample: Nuclear pore complex

Deposition Authors: Hoffmann PC , Kim H, Obarska-Kosinska A , Kreysing JP , Andino-Frydman E, Cruz-Leon S , Cernikova L, Kosinski J , Turonova B , Hummer G , Beck M
Nuclear pore permeability and fluid flow are modulated by its dilation state.
PUBMED: 39729993
DOI: doi:10.1016/j.molcel.2024.11.038
ISSN: 1097-2765
ASTM: MOCEFL
Abstract:
Changing environmental conditions necessitate rapid adaptation of cytoplasmic and nuclear volumes. We use the slime mold Dictyostelium discoideum, known for its ability to tolerate extreme changes in osmolarity, to assess which role nuclear pore complexes (NPCs) play in achieving nuclear volume adaptation and relieving mechanical stress. We capitalize on the unique properties of D. discoideum to quantify fluid flow across NPCs. D. discoideum has an elaborate NPC structure in situ. Its dilation state affects NPC permeability for nucleocytosolic flow. Based on mathematical concepts adapted from hydrodynamics, we conceptualize this phenomenon as porous flow across NPCs, which is distinct from canonically characterized modes of nucleocytoplasmic transport because of its dependence on pressure. Viral NPC blockage decreased nucleocytosolic flow. Our results may be relevant for any biological conditions that entail rapid nuclear size adaptation, including metastasizing cancer cells, migrating cells, or differentiating tissues.