EMD-21873

Single-particle
3.1 Å
EMD-21873 Deposition: 29/04/2020
Map released: 03/06/2020
Last modified: 06/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-21873

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

EMD-21873

Single-particle
3.1 Å
EMD-21873 Deposition: 29/04/2020
Map released: 03/06/2020
Last modified: 06/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Staphylococcus aureus
Sample: 50S ribosomal subunit
Fitted models: 6wqq (Avg. Q-score: 0.571)

Deposition Authors: Belousoff MJ
Characterization of the Core Ribosomal Binding Region for the Oxazolidone Family of Antibiotics Using Cryo-EM.
Wright A, Deane-Alder K , Marschall E , Bamert R, Venugopal H , Lithgow T, Lupton DW , Belousoff MJ
(2020) Acs Pharmacol Transl Sci , 3 , 425 - 432
PUBMED: 32566908
DOI: doi:10.1021/acsptsci.0c00041
ISSN: 2575-910
Abstract:
Linezolid and tedizolid are oxazolidinones with established clinical utility for the treatment of Gram-positive pathogens. Over time it has become apparent that even modest structural changes to the core phenyl oxazolidinone leads to drastic changes in biological activity. Consequently, the structure-activity relationship around the core oxazolidinone is constantly evolving, often reflected with new structural motifs present in nascent oxazolidinones. Herein we describe the use of cryo-electron microscopy to examine the differences in binding of several functionally different oxazolidinones in the hopes of enhanced understanding of their SAR. Tedizolid, radezolid, T145, and contezolid have been examined within the peptidyl transferase center (PTC) of the 50S ribosomal subunit from methicillin resistant Staphylococcus aureus. The ribosome-antibiotic complexes were resolved to a resolution of around 3 Å enabling unambiguous assignment of how each antibiotic interacts with the PTC.