EMD-21905

Single-particle
3.71 Å
EMD-21905 Deposition: 04/05/2020
Map released: 16/09/2020
Last modified: 06/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-21905

Structure of the LaINDY-alpha-ketoglutarate complex

EMD-21905

Single-particle
3.71 Å
EMD-21905 Deposition: 04/05/2020
Map released: 16/09/2020
Last modified: 06/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Lactobacillus acidophilus
Sample: LaINDY-alpha-ketoglutarate complex
Fitted models: 6wu4 (Avg. Q-score: 0.471)

Deposition Authors: Sauer DB , Marden JJ
Structural basis for the reaction cycle of DASS dicarboxylate transporters.
PUBMED: 32869741
DOI: doi:10.7554/eLife.61350
ISSN: 2050-084X
Abstract:
Citrate, α-ketoglutarate and succinate are TCA cycle intermediates that also play essential roles in metabolic signaling and cellular regulation. These di- and tricarboxylates are imported into the cell by the divalent anion sodium symporter (DASS) family of plasma membrane transporters, which contains both cotransporters and exchangers. While DASS proteins transport substrates via an elevator mechanism, to date structures are only available for a single DASS cotransporter protein in a substrate-bound, inward-facing state. We report multiple cryo-EM and X-ray structures in four different states, including three hitherto unseen states, along with molecular dynamics simulations, of both a cotransporter and an exchanger. Comparison of these outward- and inward-facing structures reveal how the transport domain translates and rotates within the framework of the scaffold domain through the transport cycle. Additionally, we propose that DASS transporters ensure substrate coupling by a charge-compensation mechanism, and by structural changes upon substrate release.