EMD-26816

Single-particle
3.9 Å
EMD-26816 Deposition: 02/05/2022
Map released: 31/08/2022
Last modified: 14/02/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-26816

Kinetically trapped misfolded state of the Tetrahymena ribozyme

EMD-26816

Single-particle
3.9 Å
EMD-26816 Deposition: 02/05/2022
Map released: 31/08/2022
Last modified: 14/02/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Tetrahymena thermophila
Sample: apo L-21 ScaI Tetrahymena Ribozyme RNA
Fitted models: 7uvt (Avg. Q-score: 0.314)

Deposition Authors: Bonilla SL , Vicens Q , Kieft JS
Cryo-EM reveals an entangled kinetic trap in the folding of a catalytic RNA.
Bonilla SL , Vicens Q , Kieft JS
(2022) Sci Adv , 8 , eabq4144 - eabq4144
PUBMED: 36026457
DOI: doi:10.1126/sciadv.abq4144
ISSN: 2375-2548
Abstract:
Functional RNAs fold through complex pathways that can contain misfolded "kinetic traps." A complete model of RNA folding requires understanding the formation of these misfolded states, but they are difficult to characterize because of their transient and potentially conformationally dynamic nature. We used cryo-electron microscopy (cryo-EM) to visualize a long-lived misfolded state in the folding pathway of the Tetrahymena thermophila group I intron, a paradigmatic RNA structure-function model system. The structure revealed how this state forms native-like secondary structure and tertiary contacts but contains two incorrectly crossed strands, consistent with a previous model. This incorrect topology mispositions a critical catalytic domain and cannot be resolved locally as extensive refolding is required. This work provides a structural framework for interpreting decades of biochemical and functional studies and demonstrates the power of cryo-EM for the exploration of RNA folding pathways.