EMD-32630
Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution
EMD-32630
Helical reconstruction28.82 Å
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Map released: 06/04/2022
Last modified: 13/12/2023
Sample Organism:
Candidatus Odinarchaeota archaeon LCB_4
Sample: Tubulin homolog from Candidatus Odinarchaeota archaeon
Deposition Authors: Akil C
,
Ali S
,
Tran LT
Sample: Tubulin homolog from Candidatus Odinarchaeota archaeon
Deposition Authors: Akil C
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Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution.
Akil C
,
Ali S
,
Tran LT
,
Gaillard J
,
Li W
,
Hayashida K,
Hirose M
,
Kato T
,
Oshima A
,
Fujishima K
,
Blanchoin L,
Narita A
,
Robinson RC
(2022) Sci Adv , 8 , eabm2225 - eabm2225
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(2022) Sci Adv , 8 , eabm2225 - eabm2225
Abstract:
Tubulins are critical for the internal organization of eukaryotic cells, and understanding their emergence is an important question in eukaryogenesis. Asgard archaea are the closest known prokaryotic relatives to eukaryotes. Here, we elucidated the apo and nucleotide-bound x-ray structures of an Asgard tubulin from hydrothermal living Odinarchaeota (OdinTubulin). The guanosine 5'-triphosphate (GTP)-bound structure resembles a microtubule protofilament, with GTP bound between subunits, coordinating the "+" end subunit through a network of water molecules and unexpectedly by two cations. A water molecule is located suitable for GTP hydrolysis. Time course crystallography and electron microscopy revealed conformational changes on GTP hydrolysis. OdinTubulin forms tubules at high temperatures, with short curved protofilaments coiling around the tubule circumference, more similar to FtsZ, rather than running parallel to its length, as in microtubules. Thus, OdinTubulin represents an evolutionary stage intermediate between prokaryotic FtsZ and eukaryotic microtubule-forming tubulins.
Tubulins are critical for the internal organization of eukaryotic cells, and understanding their emergence is an important question in eukaryogenesis. Asgard archaea are the closest known prokaryotic relatives to eukaryotes. Here, we elucidated the apo and nucleotide-bound x-ray structures of an Asgard tubulin from hydrothermal living Odinarchaeota (OdinTubulin). The guanosine 5'-triphosphate (GTP)-bound structure resembles a microtubule protofilament, with GTP bound between subunits, coordinating the "+" end subunit through a network of water molecules and unexpectedly by two cations. A water molecule is located suitable for GTP hydrolysis. Time course crystallography and electron microscopy revealed conformational changes on GTP hydrolysis. OdinTubulin forms tubules at high temperatures, with short curved protofilaments coiling around the tubule circumference, more similar to FtsZ, rather than running parallel to its length, as in microtubules. Thus, OdinTubulin represents an evolutionary stage intermediate between prokaryotic FtsZ and eukaryotic microtubule-forming tubulins.