EMD-39627

Single-particle
3.14 Å
EMD-39627 Deposition: 30/03/2024
Map released: 06/11/2024
Last modified: 22/01/2025
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-39627

The structure of IgE receptor binding to IgE

EMD-39627

Single-particle
3.14 Å
EMD-39627 Deposition: 30/03/2024
Map released: 06/11/2024
Last modified: 22/01/2025
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens
Sample: The structure of IgE receptor binding to IgE
Fitted models: 8ywa (Avg. Q-score: 0.236)

Deposition Authors: Chen MY, Su Q , Shi YG
Molecular mechanism of IgE-mediated Fc epsilon RI activation.
Chen M , Su Q , Shi Y
(2025) Nature , 637 , 453 - 460
PUBMED: 39442557
DOI: doi:10.1038/s41586-024-08229-8
ISSN: 1476-4687
ASTM: NATUAS
Abstract:
Allergic diseases affect more than a quarter of individuals in industrialized countries, and are a major public health concern1,2. The high-affinity Fc receptor for immunoglobulin E (FcεRI), which is mainly present on mast cells and basophils, has a crucial role in allergic diseases3-5. Monomeric immunoglobulin E (IgE) binding to FcεRI regulates mast cell survival, differentiation and maturation6-8. However, the underlying molecular mechanism remains unclear. Here we demonstrate that prior to IgE binding, FcεRI exists mostly as a homodimer on human mast cell membranes. The structure of human FcεRI confirms the dimeric organization, with each promoter comprising one α subunit, one β subunit and two γ subunits. The transmembrane helices of the α subunits form a layered arrangement with those of the γ and β subunits. The dimeric interface is mediated by a four-helix bundle of the α and γ subunits at the intracellular juxtamembrane region. Cholesterol-like molecules embedded within the transmembrane domain may stabilize the dimeric assembly. Upon IgE binding, the dimeric FcεRI dissociates into two protomers, each of which binds to an IgE molecule. This process elicits transcriptional activation of Egr1, Egr3 and Ccl2 in rat basophils, which can be attenuated by inhibiting the FcεRI dimer-to-monomer transition. Collectively, our study reveals the mechanism of antigen-independent, IgE-mediated FcεRI activation.