EMD-40214

Helical reconstruction
2.98 Å
EMD-40214 Deposition: 23/03/2023
Map released: 28/06/2023
Last modified: 13/09/2023
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-40214

CryoEM map of the locally refined interfaces-5,6 of soluble OPA1 from the GDP-AlFx bound helical assembly on a lipid membrane

EMD-40214

Helical reconstruction
2.98 Å
EMD-40214 Deposition: 23/03/2023
Map released: 28/06/2023
Last modified: 13/09/2023
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Homo sapiens
Sample: sOPA1 helical assembly on a lipid membrane

Deposition Authors: Nyenhuis SB , Wu X, Strub MP, Yim YI, Stanton AE, Baena V , Syed ZA , Canagarajah B, Hammer JA, Hinshaw JE
OPA1 helical structures give perspective to mitochondrial dysfunction.
Nyenhuis SB , Wu X, Strub MP, Yim YI, Stanton AE, Baena V , Syed ZA , Canagarajah B, Hammer JA, Hinshaw JE
(2023) Nature , 620 , 1109 - 1116
PUBMED: 37612506
DOI: doi:10.1038/s41586-023-06462-1
ISSN: 1476-4687
ASTM: NATUAS
Abstract:
Dominant optic atrophy is one of the leading causes of childhood blindness. Around 60-80% of cases1 are caused by mutations of the gene that encodes optic atrophy protein 1 (OPA1), a protein that has a key role in inner mitochondrial membrane fusion and remodelling of cristae and is crucial for the dynamic organization and regulation of mitochondria2. Mutations in OPA1 result in the dysregulation of the GTPase-mediated fusion process of the mitochondrial inner and outer membranes3. Here we used cryo-electron microscopy methods to solve helical structures of OPA1 assembled on lipid membrane tubes, in the presence and absence of nucleotide. These helical assemblies organize into densely packed protein rungs with minimal inter-rung connectivity, and exhibit nucleotide-dependent dimerization of the GTPase domains-a hallmark of the dynamin superfamily of proteins4. OPA1 also contains several unique secondary structures in the paddle domain that strengthen its membrane association, including membrane-inserting helices. The structural features identified in this study shed light on the effects of pathogenic point mutations on protein folding, inter-protein assembly and membrane interactions. Furthermore, mutations that disrupt the assembly interfaces and membrane binding of OPA1 cause mitochondrial fragmentation in cell-based assays, providing evidence of the biological relevance of these interactions.