EMD-41321
Structure of Gabija AB complex 1
EMD-41321
Single-particle2.98 Å

Map released: 24/04/2024
Last modified: 04/09/2024
Sample Organism:
Bacillus cereus
Sample: Tetramer of Gabija protein AB (4:4)
Fitted models: 8tk1 (Avg. Q-score: 0.453)
Deposition Authors: Shen ZF, Yang XY
,
Fu TM
Sample: Tetramer of Gabija protein AB (4:4)
Fitted models: 8tk1 (Avg. Q-score: 0.453)
Deposition Authors: Shen ZF, Yang XY


Molecular basis of Gabija anti-phage supramolecular assemblies.
Yang XY
,
Shen Z
,
Xie J,
Greenwald J
,
Marathe I,
Lin Q,
Xie WJ
,
Wysocki VH,
Fu TM
(2024) Nat Struct Mol Biol , 31 , 1243 - 1250





(2024) Nat Struct Mol Biol , 31 , 1243 - 1250
Abstract:
As one of the most prevalent anti-phage defense systems in prokaryotes, Gabija consists of a Gabija protein A (GajA) and a Gabija protein B (GajB). The assembly and function of the Gabija system remain unclear. Here we present cryo-EM structures of Bacillus cereus GajA and GajAB complex, revealing tetrameric and octameric assemblies, respectively. In the center of the complex, GajA assembles into a tetramer, which recruits two sets of GajB dimer at opposite sides of the complex, resulting in a 4:4 GajAB supramolecular complex for anti-phage defense. Further biochemical analysis showed that GajA alone is sufficient to cut double-stranded DNA and plasmid DNA, which can be inhibited by ATP. Unexpectedly, the GajAB displays enhanced activity for plasmid DNA, suggesting a role of substrate selection by GajB. Together, our study defines a framework for understanding anti-phage immune defense by the GajAB complex.
As one of the most prevalent anti-phage defense systems in prokaryotes, Gabija consists of a Gabija protein A (GajA) and a Gabija protein B (GajB). The assembly and function of the Gabija system remain unclear. Here we present cryo-EM structures of Bacillus cereus GajA and GajAB complex, revealing tetrameric and octameric assemblies, respectively. In the center of the complex, GajA assembles into a tetramer, which recruits two sets of GajB dimer at opposite sides of the complex, resulting in a 4:4 GajAB supramolecular complex for anti-phage defense. Further biochemical analysis showed that GajA alone is sufficient to cut double-stranded DNA and plasmid DNA, which can be inhibited by ATP. Unexpectedly, the GajAB displays enhanced activity for plasmid DNA, suggesting a role of substrate selection by GajB. Together, our study defines a framework for understanding anti-phage immune defense by the GajAB complex.