EMD-41321

Single-particle
2.98 Å
EMD-41321 Deposition: 25/07/2023
Map released: 24/04/2024
Last modified: 04/09/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-41321

Structure of Gabija AB complex 1

EMD-41321

Single-particle
2.98 Å
EMD-41321 Deposition: 25/07/2023
Map released: 24/04/2024
Last modified: 04/09/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Bacillus cereus
Sample: Tetramer of Gabija protein AB (4:4)
Fitted models: 8tk1 (Avg. Q-score: 0.453)

Deposition Authors: Shen ZF, Yang XY , Fu TM
Molecular basis of Gabija anti-phage supramolecular assemblies.
Yang XY , Shen Z , Xie J, Greenwald J , Marathe I, Lin Q, Xie WJ , Wysocki VH, Fu TM
(2024) Nat Struct Mol Biol , 31 , 1243 - 1250
PUBMED: 38627580
DOI: doi:10.1038/s41594-024-01283-w
ISSN: 1545-9985
Abstract:
As one of the most prevalent anti-phage defense systems in prokaryotes, Gabija consists of a Gabija protein A (GajA) and a Gabija protein B (GajB). The assembly and function of the Gabija system remain unclear. Here we present cryo-EM structures of Bacillus cereus GajA and GajAB complex, revealing tetrameric and octameric assemblies, respectively. In the center of the complex, GajA assembles into a tetramer, which recruits two sets of GajB dimer at opposite sides of the complex, resulting in a 4:4 GajAB supramolecular complex for anti-phage defense. Further biochemical analysis showed that GajA alone is sufficient to cut double-stranded DNA and plasmid DNA, which can be inhibited by ATP. Unexpectedly, the GajAB displays enhanced activity for plasmid DNA, suggesting a role of substrate selection by GajB. Together, our study defines a framework for understanding anti-phage immune defense by the GajAB complex.