EMD-4796

Single-particle
3.15 Å
EMD-4796 Deposition: 10/04/2019
Map released: 26/06/2019
Last modified: 25/11/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-4796

yeast pre-40S particle - focus on Dim1

EMD-4796

Single-particle
3.15 Å
EMD-4796 Deposition: 10/04/2019
Map released: 26/06/2019
Last modified: 25/11/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Saccharomyces cerevisiae S288c
Sample: C2-S20DeltaLoop State 2 of yeast pre-40S particles purified with Tsr1-TAP as bait, in mutant conditions (deletion of aa 68-78 of Rps20)
Fitted models: 6rbd, 6rbe (Avg. Q-score: -5.0E-4)

Deposition Authors: Shayan R, Mitterer V, Ferreira-Cerca S, Murat G, Rinaldi D, Enne T, Weigl S, Omanic H, Gleizes PE, Kressler D, Pertschy B, Plisson-Chastang C
Conformational proofreading of distant 40S ribosomal subunit maturation events by a long-range communication mechanism.
PUBMED: 31227701
DOI: doi:10.1038/s41467-019-10678-z
ISSN: 2041-1723
Abstract:
Eukaryotic ribosomes are synthesized in a hierarchical process driven by a plethora of assembly factors, but how maturation events at physically distant sites on pre-ribosomes are coordinated is poorly understood. Using functional analyses and cryo-EM, we show that ribosomal protein Rps20 orchestrates communication between two multi-step maturation events across the pre-40S subunit. Our study reveals that during pre-40S maturation, formation of essential contacts between Rps20 and Rps3 permits assembly factor Ltv1 to recruit the Hrr25 kinase, thereby promoting Ltv1 phosphorylation. In parallel, a deeply buried Rps20 loop reaches to the opposite pre-40S side, where it stimulates Rio2 ATPase activity. Both cascades converge to the final maturation steps releasing Rio2 and phosphorylated Ltv1. We propose that conformational proofreading exerted via Rps20 constitutes a checkpoint permitting assembly factor release and progression of pre-40S maturation only after completion of all earlier maturation steps.