EMD-8372
Structure of rabbit RyR1 (Ca2+-only dataset, class 1)
EMD-8372
Single-particle4.0 Å

Map released: 12/10/2016
Last modified: 13/03/2024
Sample Organism:
Homo sapiens,
Oryctolagus cuniculus
Sample: RyR1-Cs2 complex
Fitted models: 5t9m (Avg. Q-score: 0.347)
Deposition Authors: Clarke OB, des Georges A
Sample: RyR1-Cs2 complex
Fitted models: 5t9m (Avg. Q-score: 0.347)
Deposition Authors: Clarke OB, des Georges A

Structural Basis for Gating and Activation of RyR1.
des Georges A
,
Clarke OB,
Zalk R,
Yuan Q,
Condon KJ,
Grassucci RA,
Hendrickson WA,
Marks AR,
Frank J
(2016) Cell , 167 , 145 - 157.e17

(2016) Cell , 167 , 145 - 157.e17
Abstract:
The type-1 ryanodine receptor (RyR1) is an intracellular calcium (Ca(2+)) release channel required for skeletal muscle contraction. Here, we present cryo-EM reconstructions of RyR1 in multiple functional states revealing the structural basis of channel gating and ligand-dependent activation. Binding sites for the channel activators Ca(2+), ATP, and caffeine were identified at interdomain interfaces of the C-terminal domain. Either ATP or Ca(2+) alone induces conformational changes in the cytoplasmic assembly ("priming"), without pore dilation. In contrast, in the presence of all three activating ligands, high-resolution reconstructions of open and closed states of RyR1 were obtained from the same sample, enabling analyses of conformational changes associated with gating. Gating involves global conformational changes in the cytosolic assembly accompanied by local changes in the transmembrane domain, which include bending of the S6 transmembrane segment and consequent pore dilation, displacement, and deformation of the S4-S5 linker and conformational changes in the pseudo-voltage-sensor domain.
The type-1 ryanodine receptor (RyR1) is an intracellular calcium (Ca(2+)) release channel required for skeletal muscle contraction. Here, we present cryo-EM reconstructions of RyR1 in multiple functional states revealing the structural basis of channel gating and ligand-dependent activation. Binding sites for the channel activators Ca(2+), ATP, and caffeine were identified at interdomain interfaces of the C-terminal domain. Either ATP or Ca(2+) alone induces conformational changes in the cytoplasmic assembly ("priming"), without pore dilation. In contrast, in the presence of all three activating ligands, high-resolution reconstructions of open and closed states of RyR1 were obtained from the same sample, enabling analyses of conformational changes associated with gating. Gating involves global conformational changes in the cytosolic assembly accompanied by local changes in the transmembrane domain, which include bending of the S6 transmembrane segment and consequent pore dilation, displacement, and deformation of the S4-S5 linker and conformational changes in the pseudo-voltage-sensor domain.