EMD-9166

Single-particle
4.8 Å
EMD-9166 Deposition: 01/10/2018
Map released: 06/03/2019
Last modified: 20/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-9166

Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment

EMD-9166

Single-particle
4.8 Å
EMD-9166 Deposition: 01/10/2018
Map released: 06/03/2019
Last modified: 20/11/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Human immunodeficiency virus 1, Homo sapiens
Sample: Cryo-EM structure of BF520.1 Fab in complex with BG505.SOSIP.664
Fitted models: 6mn7 (Avg. Q-score: 0.049)

Deposition Authors: Williams JA, Lee KK, Overbaugh J
Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage.
PUBMED: 31097697
DOI: doi:10.1038/s41467-019-09481-7
ISSN: 2041-1723
Abstract:
HIV-infected infants develop broadly neutralizing plasma responses with more rapid kinetics than adults, suggesting the ontogeny of infant responses could better inform a path to achievable vaccine targets. Here we reconstruct the developmental lineage of BF520.1, an infant-derived HIV-specific broadly neutralizing antibody (bnAb), using computational methods developed specifically for this purpose. We find that the BF520.1 inferred naive precursor binds HIV Env. We also show that heterologous cross-clade neutralizing activity evolved in the infant within six months of infection and that, ultimately, only 2% SHM is needed to achieve the full breadth of the mature antibody. Mutagenesis and structural analyses reveal that, for this infant bnAb, substitutions in the kappa chain were critical for activity, particularly in CDRL1. Overall, the developmental pathway of this infant antibody includes features distinct from adult antibodies, including several that may be amenable to better vaccine responses.