EMD-29390

Single-particle
3.5 Å
EMD-29390 Deposition: 06/01/2023
Map released: 28/06/2023
Last modified: 19/06/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-29390

Prohead I ico symmetry

EMD-29390

Single-particle
3.5 Å
EMD-29390 Deposition: 06/01/2023
Map released: 28/06/2023
Last modified: 19/06/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Sample Organism: Escherichia phage HK97
Sample: Escherichia phage HK97
Fitted models: 8fqk (Avg. Q-score: 0.364)

Deposition Authors: Huet A , Oh B, Maurer J, Duda RL , Conway JF
A symmetry mismatch unraveled: How phage HK97 scaffold flexibly accommodates a 12-fold pore at a 5-fold viral capsid vertex.
Huet A , Oh B, Maurer J, Duda RL , Conway JF
(2023) Sci Adv , 9 , eadg8868 - eadg8868
PUBMED: 37327331
DOI: doi:10.1126/sciadv.adg8868
ISSN: 2375-2548
Abstract:
Tailed bacteriophages and herpesviruses use a transient scaffold to assemble icosahedral capsids with hexameric capsomers on the faces and pentameric capsomers at all but one vertex where a 12-fold portal is thought to nucleate the assembly. How does the scaffold orchestrate this step? We have determined the portal vertex structure of the bacteriophage HK97 procapsid, where the scaffold is a domain of the major capsid protein. The scaffold forms rigid helix-turn-strand structures on the interior surfaces of all capsomers and is further stabilized around the portal, forming trimeric coiled-coil towers, two per surrounding capsomer. These 10 towers bind identically to 10 of 12 portal subunits, adopting a pseudo-12-fold organization that explains how the symmetry mismatch is managed at this early step.