Cryo-EM structure of MCM double hexamer with structured Mcm4-NSD
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7v3u
Q-score: 0.514
Cheng J, Li N, Huo Y, Dang S, Tye BK, Gao N, Zhai Y
Nat Commun (2022) 13 pp. 1396-1396 [ DOI: doi:10.1038/s41467-022-29070-5 Pubmed: 35296675 ]
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Mcm double hexamer (dh) (Complex from Saccharomyces cerevisiae S288c)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of MCM double hexamer bound with DDK in State I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7v3v
Q-score: 0.477
Cheng J, Li N, Huo Y, Dang S, Tye BK, Gao N, Zhai Y
Nat Commun (2022) 13 pp. 1396-1396 [ DOI: doi:10.1038/s41467-022-29070-5 Pubmed: 35296675 ]
- Dh-ddk (state i) (Complex from Saccharomyces cerevisiae S288c)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ddk kinase regulatory subunit dbf4 (80 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cell division control protein 7 (58 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of MCM double hexamer
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 7w8g
Q-score: 0.574
Cheng J, Li N, Huo Y, Dang S, Tye BK, Gao N, Zhai Y
Nat Commun (2022) 13 pp. 1396-1396 [ DOI: doi:10.1038/s41467-022-29070-5 Pubmed: 35296675 ]
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Mcm double hexamer (dh) (Complex from Saccharomyces cerevisiae S288c)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
Human Origin Recognition Complex, ORC2-5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7cte
Q-score: 0.411
Cheng J, Li N, Wang X, Hu J, Zhai Y, Gao N
Cell Discov (2020) 6 pp. 88-88 [ Pubmed: 33298899 DOI: doi:10.1038/s41421-020-00232-3 ]
- Origin recognition complex subunit 4 (50 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Origin recognition complex subunit 5 (50 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 2 (66 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 3 (82 kDa, Protein from Homo sapiens)
- Human origin recognition complex 2-5 (Complex from Homo sapiens)
Human origin recognition complex 1-5 State II
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7ctf
Q-score: 0.217
Cheng J, Li N, Wang X, Hu J, Zhai Y, Gao N
Cell Discov (2020) 6 pp. 88-88 [ Pubmed: 33298899 DOI: doi:10.1038/s41421-020-00232-3 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Origin recognition complex subunit 5 (50 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 4 (50 kDa, Protein from Homo sapiens)
- Human origin recognition complex 1-5 (Complex from Homo sapiens)
- Origin recognition complex subunit 1 (97 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 2 (66 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 3 (82 kDa, Protein from Homo sapiens)
Human Origin Recognition Complex, ORC1-5 State I
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7ctg
Q-score: 0.199
Cheng J, Li N, Wang X, Hu J, Zhai Y, Gao N
Cell Discov (2020) 6 pp. 88-88 [ Pubmed: 33298899 DOI: doi:10.1038/s41421-020-00232-3 ]
- Origin recognition complex subunit 4 (50 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Origin recognition complex subunit 5 (50 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 1 (97 kDa, Protein from Homo sapiens)
- Human origin recognition complex 1-5 state i (Complex from Homo sapiens)
- Origin recognition complex subunit 2 (66 kDa, Protein from Homo sapiens)
- Origin recognition complex subunit 3 (82 kDa, Protein from Homo sapiens)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 5zr1
Q-score: 0.547
Li N, Lam WH, Zhai Y, Cheng J, Cheng E, Zhao Y, Gao N, Tye BK
Nature (2018) 559 pp. 217-222 [ Pubmed: 29973722 DOI: doi:10.1038/s41586-018-0293-x ]
- 72bp-oring dna, acs305, t-rich (22 kDa, DNA from Saccharomyces cerevisiae)
- Origin recognition complex subunit 1 (104 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Origin recognition complex subunit 4 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Origin recognition complex subunit 3 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Origin recognition complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saccharomyces cerevisiae origin recognition complex bound to a 72-bp origin dna containing acs and b1 element (Complex from Saccharomyces cerevisiae)
- Origin recognition complex subunit 5 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 72bp-oring dna, acs305, a-rich (22 kDa, DNA from Saccharomyces cerevisiae)
- Origin recognition complex subunit 6 (50 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))