BA.2.86 RBD protein in complex with ACE2.
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8yzb
Q-score: 0.477
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
- Spike glycoprotein,fibritin,fusion protein (142 kDa, Protein from synthetic construct)
- Angiotensin-converting enzyme 2 (85 kDa, Protein from Homo sapiens)
- Ba.2.86 rbd protein in complex with ace2 (Complex from Homo sapiens)
Structure of BA.2.86 spike protein in complex with ACE2.
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8yzc
Q-score: 0.267
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
Structure of JN.1 RBD protein in complex with ACE2.
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yzd
Q-score: 0.573
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
The JN.1 spike protein (S) in complex with ACE2.
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8yze
Q-score: 0.25
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
Li Y, Shao K, Li Z, Zhu K, Gan BK, Shi J, Xiao Y, Luo M
Nat Commun (2024) 15 pp. 7090-7090 [ DOI: doi:10.1038/s41467-024-51600-6 Pubmed: 39154050 ]
- Phosphate ion (94 Da, Ligand)
- Protein kinase domain-containing protein (100 kDa, Protein from Streptococcus pneumoniae)
- Dimeric structure of class iii lanthipeptide modification enzyme pnekc with one protomer in complex with substrate pnea and gtp (210 kDa, Complex from Streptococcus pneumoniae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Pnea lp (1 kDa, Protein from Streptococcus pneumoniae)
Li Y, Shao K, Li Z, Zhu K, Gan BK, Shi J, Xiao Y, Luo M
Nat Commun (2024) 15 pp. 7090-7090 [ DOI: doi:10.1038/s41467-024-51600-6 Pubmed: 39154050 ]
- Phosphate ion (94 Da, Ligand)
- Sapb/amfs family lantipeptide (4 kDa, Protein from Streptococcus pneumoniae)
- Dimeric structure of class iii lanthipeptide modification pnekc with gsp and pnea bound to one protomer. (210 kDa, Complex from Streptococcus pneumoniae)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Protein kinase domain-containing protein (100 kDa, Protein from Streptococcus pneumoniae)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
Cryo-EM structure of Mycobacterium tuberculosis FtsEX complex in peptidisc
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8idb
Q-score: 0.341
Li J, Xu X, Shi J, Hermoso JA, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7999-7999 [ DOI: doi:10.1038/s41467-023-43770-6 Pubmed: 38044344 ]
- Cell division atp-binding protein ftse (25 kDa, Protein from Mycobacterium tuberculosis)
- Cell division protein ftsx (32 kDa, Protein from Mycobacterium tuberculosis)
- Complex of ftsex (Complex from Mycobacterium tuberculosis)
Cryo-EM structure of Mycobacterium tuberculosis FtsEX/RipC complex in peptidisc
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8idc
Q-score: 0.277
Li J, Xu X, Shi J, Hermoso JA, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7999-7999 [ DOI: doi:10.1038/s41467-023-43770-6 Pubmed: 38044344 ]
- Cell division atp-binding protein ftse (25 kDa, Protein from Mycobacterium tuberculosis)
- Complex of ftsex-ripc (Complex from Mycobacterium tuberculosis)
- Cell division protein ftsx (32 kDa, Protein from Mycobacterium tuberculosis)
- Nlpc/p60 family protein (39 kDa, Protein from Mycobacterium tuberculosis)
Cryo-EM structure of Mycobacterium tuberculosis ATP bound FtsEX/RipC complex in peptidisc
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8idd
Q-score: 0.309
Li J, Xu X, Shi J, Hermoso JA, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7999-7999 [ DOI: doi:10.1038/s41467-023-43770-6 Pubmed: 38044344 ]
- Complex of ftsex-ripc-atp (Complex from Mycobacterium tuberculosis)
- Cell division atp-binding protein ftse (25 kDa, Protein from Mycobacterium tuberculosis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable endopeptidase mt2245 (39 kDa, Protein from Mycobacterium tuberculosis)
- Cell division protein ftsx (32 kDa, Protein from Mycobacterium tuberculosis)