Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8xyd
Q-score: 0.366
Fan W, Xu Y, He X, Luo P, Zhu J, Li J, Wang R, Yuan Q, Wu K, Hu W, Zhao Y, Xu S, Cheng X, Wang Y, Xu HE, Zhuang Y
Cell Rep (2024) 43 pp. 114422-114422 [ DOI: doi:10.1016/j.celrep.2024.114422 Pubmed: 38943642 ]
- Ptafr-paf g protein complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Platelet-activating factor receptor (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- (2r)-2-(acetyloxy)-3-(hexadecyloxy)propyl 2-(trimethylammonio)ethyl phosphate (523 Da, Ligand)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkz
Q-score: 0.475
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2/ago (Complex from Geobacter sulfurreducens PCA)
- Ago (Complex)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jl0
Q-score: 0.547
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- The sir2/ago/guide rna/recognition dna complex (Complex from Geobacter sulfurreducens PCA)
- Dna/guide rna duplex (Complex)
- Rna (5'-r(p*ap*up*ap*ap*up*gp*gp*up*up*up*cp*up*up*ap*gp*ap*cp*gp*up*cp*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Ago (Complex)
- Dna (5'-d(p*ap*cp*gp*ap*cp*gp*tp*cp*tp*ap*ap*gp*ap*ap*ap*cp*cp*ap*tp*tp*ap*t)-3') (6 kDa, DNA from synthetic construct)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
Cryo-EM structure of the SV1-Gs complex.
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7v9l
Q-score: 0.505
Cong Z, Zhou F, Zhang C, Zou X, Zhang H, Wang Y, Zhou Q, Cai X, Liu Q, Li J, Shao L, Mao C, Wang X, Wu J, Xia T, Zhao LH, Jiang H, Zhang Y, Xu HE, Cheng X, Yang D, Wang MW
PNAS (2021) 118 [ Pubmed: 34599099 DOI: doi:10.1073/pnas.2106606118 ]
- Nanobody 35 (15 kDa, Protein from synthetic construct)
- Cryo-em structure of the human growth hormone releasing hormone receptor splice variant 1 in complex with g protein (Complex from Homo sapiens)
- Ghrh receptor splice variant 1,ghrh receptor splice variant 1,ghrh receptor splice variant 1,sv1 (57 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Rattus norvegicus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (41 kDa, Protein from Homo sapiens)
Cryo-EM structure of SARS-CoV-2 Omicron Spike protein with human ACE2 receptor, C2 state
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wvp
Q-score: 0.143
Hong Q, Han W, Li J, Xu S, Wang Y, Xu C, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
Nature (2022) 604 pp. 546-552 [ DOI: doi:10.1038/s41586-022-04581-9 Pubmed: 35228716 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 receptor (Complex)
- Cryo-em structure of sars-cov-2 omicron spike protein with human ace2 receptor, c2 state (Complex from Homo sapiens)
Cryo-EM structure of SARS-CoV-2 Omicron Spike protein with human ACE2 receptor, C3 state
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 7wvq
Q-score: 0.057
Hong Q, Han W, Li J, Xu S, Wang Y, Xu C, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
Nature (2022) 604 pp. 546-552 [ DOI: doi:10.1038/s41586-022-04581-9 Pubmed: 35228716 ]
- Cryo-em structure of sars-cov-2 omicron spike protein with human ace2 receptor, c3 state (Complex from Homo sapiens)
- Omicron spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- Human ace2 receptor (Complex)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wvn
Q-score: 0.247
Hong Q, Han W, Li J, Xu S, Wang Y, Xu C, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
Nature (2022) 604 pp. 546-552 [ DOI: doi:10.1038/s41586-022-04581-9 Pubmed: 35228716 ]
- Omicron s-open (Complex)
- Omicron s-open (Complex from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Sars-cov-2 omicron varient (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Homo sapiens)
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7wvo
Q-score: 0.254
Hong Q, Han W, Li J, Xu S, Wang Y, Xu C, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
Nature (2022) 604 pp. 546-552 [ DOI: doi:10.1038/s41586-022-04581-9 Pubmed: 35228716 ]
- Omicron s-open-2 (Complex from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Omicron s-open-2 (Complex)
- Sars-cov-2 omicron varient (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Homo sapiens)
Cryo-EM structure of SARS-CoV-2 Omicron spike protein with ACE2, C1 state
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7wk4
Q-score: 0.233
Hong Q, Han W, Li J, Xu S, Wang Y, Xu C, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
Nature (2022) 604 pp. 546-552 [ DOI: doi:10.1038/s41586-022-04581-9 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron spike protein (Complex)
- Human ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov-2 omicron spike protein with human ace2 (Complex from Homo sapiens)
Cryo-EM structure of Omicron S-ACE2, C2 state
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7wk5
Q-score: 0.202
Hong Q, Han W, Li J, Xu S, Wang Y, Li Z, Wang Y, Zhang C, Huang Z, Cong Y
bioRxiv (2022) [ DOI: doi:10.1101/2022.01.10.475532 ]
- Human ace2 receptor (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron spike protein (Complex)
- Cryo-em structure of sars-cov-2 omicron spike protein with human ace2 receptor, c2 state (Complex from Homo sapiens)