Shi J, Feng Z, Song Q, Wen A, Liu T, Xu L, Ye Z, Xu S, Gao F, Xiao L, Zhu J, Das K, Zhao G, Li J, Feng Y, Lin W
Nat Commun (2025) 16 pp. 1573- [ DOI: doi:10.1038/s41467-025-56697-x ]
- Mycobacterium tuberculosis transcription activation complex with unphosphated phop (Complex from Mycobacterium tuberculosis)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Template strand dna (33 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis)
- Non-template strand dna (33 kDa, DNA from Mycobacterium tuberculosis)
- Rna polymerase sigma factor siga (57 kDa, Protein from Mycobacterium tuberculosis)
Shi J, Feng Z, Song Q, Wen A, Liu T, Xu L, Ye Z, Xu S, Gao F, Xiao L, Zhu J, Das K, Zhao G, Li J, Feng Y, Lin W
Nat Commun (2025) 16 pp. 1573- [ DOI: doi:10.1038/s41467-025-56697-x ]
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Possible two component system response transcriptional positive regulator phop (30 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase sigma factor siga (57 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Mycobacterium tuberculosis transcription activation complex with two phop molecules (Complex from Mycobacterium tuberculosis)
- Template strand dna (23 kDa, DNA from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Non-template strand dna (23 kDa, DNA from Mycobacterium tuberculosis H37Rv)
Shi J, Feng Z, Song Q, Wen A, Liu T, Xu L, Ye Z, Xu S, Gao F, Xiao L, Zhu J, Das K, Zhao G, Li J, Feng Y, Lin W
Nat Commun (2025) 16 pp. 1573- [ DOI: doi:10.1038/s41467-025-56697-x ]
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase sigma factor siga (57 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Mycobacterium tuberculosis transcription activation complex with four phop molecules (composite map) (Complex from Mycobacterium tuberculosis)
- Template strand dna of the promoter (30 kDa, DNA from Mycobacterium tuberculosis H37Rv)
- Possible two component system response transcriptional positive regulator phop (27 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Non-template strand dna of the promoter (30 kDa, DNA from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis H37Rv)
Shi J, Feng Z, Song Q, Wen A, Liu T, Xu L, Ye Z, Xu S, Gao F, Xiao L, Zhu J, Das K, Zhao G, Li J, Feng Y, Lin W
Nat Commun (2025) 16 pp. 1573- [ DOI: doi:10.1038/s41467-025-56697-x ]
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Template strand dna of the promoter (33 kDa, DNA from Mycobacterium tuberculosis H37Rv)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase sigma factor siga (57 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Mycobacterium tuberculosis transcription activation complex with six phop molecules (composite map) (Complex from Mycobacterium tuberculosis)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Possible two component system response transcriptional positive regulator phop (27 kDa, Protein from Mycobacterium tuberculosis H37Rv)
- Non-template strand dna of the promoter (33 kDa, DNA from Mycobacterium tuberculosis H37Rv)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis H37Rv)
SFTSV Gn in complex with JK-8/12 Fab
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8zhq
Q-score: 0.505
Zhang S, Shang H, Han S, Li J, Peng X, Wu Y, Yang X, Leng Y, Wang F, Cui N, Xu L, Zhang H, Guo Y, Xu X, Zhang N, Liu W, Li H
Ebiomedicine (2024) 111 pp. 105481-105481 [ Pubmed: 39644769 DOI: doi:10.1016/j.ebiom.2024.105481 ]
- Envelopment polyprotein (38 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Jk-8 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Jk-8 fab light chain (23 kDa, Protein from Homo sapiens)
- Jk-12 fab light chain (22 kDa, Protein from Homo sapiens)
- Jk-12 fab heavy chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ternary complex of sftsv gn with neutralizing antibodies fab jk-8 and jk-12 (150 kDa, Complex from Homo sapiens)
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8xhv
Q-score: 0.515
Tao X, Ding H, Wu S, Wang F, Xu H, Li J, Zhai C, Li S, Chen K, Wu S, Liu Y, Ma L
Nucleic Acids Res (2024) 52 pp. 11895-11910 [ DOI: doi:10.1093/nar/gkae820 Pubmed: 39315697 ]
- Water (18 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- Kmago (85 kDa, Protein from Kurthia massiliensis)
- Guide dna (5 kDa, DNA from Kurthia massiliensis)
- Structure of the argonaute protein from kurthia massiliensis in complex with guide dna (Complex from Kurthia massiliensis)
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8xjx
Q-score: 0.529
Tao X, Ding H, Wu S, Wang F, Xu H, Li J, Zhai C, Li S, Chen K, Wu S, Liu Y, Ma L
Nucleic Acids Res (2024) 52 pp. 11895-11910 [ DOI: doi:10.1093/nar/gkae820 Pubmed: 39315697 ]
- Water (18 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- Kmago (85 kDa, Protein from Kurthia massiliensis)
- Kmago (Complex from Kurthia massiliensis)
- Guide dna (5 kDa, DNA from Kurthia massiliensis)
- Target dna (5 kDa, DNA from Kurthia massiliensis)
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8xk3
Q-score: 0.567
Tao X, Ding H, Wu S, Wang F, Xu H, Li J, Zhai C, Li S, Chen K, Wu S, Liu Y, Ma L
Nucleic Acids Res (2024) 52 pp. 11895-11910 [ DOI: doi:10.1093/nar/gkae820 Pubmed: 39315697 ]
- Water (18 Da, Ligand)
- Kmago (85 kDa, Protein from Kurthia massiliensis)
- Manganese (ii) ion (54 Da, Ligand)
- Kmago (Complex from Kurthia massiliensis)
- Target dna-2 (2 kDa, DNA from Kurthia massiliensis)
- Target dna-1 (2 kDa, DNA from Kurthia massiliensis)
- Guide dna (5 kDa, DNA from Kurthia massiliensis)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8xk4
Q-score: 0.513
Tao X, Ding H, Wu S, Wang F, Xu H, Li J, Zhai C, Li S, Chen K, Wu S, Liu Y, Ma L
Nucleic Acids Res (2024) 52 pp. 11895-11910 [ DOI: doi:10.1093/nar/gkae820 Pubmed: 39315697 ]
- Water (18 Da, Ligand)
- 2'-deoxycytidine-5'-monophosphate (307 Da, Ligand)
- Manganese (ii) ion (54 Da, Ligand)
- Kmago (85 kDa, Protein from Kurthia massiliensis)
- Target dna (2 kDa, DNA from Kurthia massiliensis)
- Kmago (Complex from Kurthia massiliensis)
- Guide dna (5 kDa, DNA from Kurthia massiliensis)