Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8xaw
Q-score: 0.553
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ Pubmed: 38834762 DOI: doi:10.1038/s41422-024-00981-w ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- S20dna1 (18 kDa, DNA from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- S20dna2 (18 kDa, DNA from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
- Duf4297-hera-dna-state2 (Complex from Escherichia coli)
Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8xax
Q-score: 0.516
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ Pubmed: 38834762 DOI: doi:10.1038/s41422-024-00981-w ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Duf4297-hera-dna state1 (Complex from Escherichia coli)
- S20dna1 (18 kDa, DNA from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- S20dna2 (18 kDa, DNA from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8xay
Q-score: 0.55
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ Pubmed: 38834762 DOI: doi:10.1038/s41422-024-00981-w ]
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- S20dna3 (18 kDa, Macromolecule from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
- Duf4297-hera (Complex from Escherichia coli)
- S20dna4 (18 kDa, DNA from Escherichia coli)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ip3
Q-score: 0.563
Li M, Li Y, Lu Y, Li J, Lu X, Ren Y, Wen T, Wang Y, Chang S, Zhang X, Yang X, Shen Y
Nat Commun (2023) 14 pp. 4713-4713 [ Pubmed: 37543649 DOI: doi:10.1038/s41467-023-40516-2 ]
- Chloride ion (35 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Magnesium transporter mrs2 homolog, mitochondrial (51 kDa, Protein from Homo sapiens)
- Human mrs2 (250 kDa, Complex from Homo sapiens)
Cryo-EM structure of hMRS-highEDTA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ip4
Q-score: 0.529
Li M, Li Y, Lu Y, Li J, Lu X, Ren Y, Wen T, Wang Y, Chang S, Zhang X, Yang X, Shen Y
Nat Commun (2023) 14 pp. 4713-4713 [ Pubmed: 37543649 DOI: doi:10.1038/s41467-023-40516-2 ]
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Magnesium transporter mrs2 homolog, mitochondrial (51 kDa, Protein from Homo sapiens)
- Human mrs2 (250 kDa, Complex from Homo sapiens)
Cryo-EM structure of hMRS2-lowEDTA
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8ip5
Q-score: 0.563
Li M, Li Y, Lu Y, Li J, Lu X, Ren Y, Wen T, Wang Y, Chang S, Zhang X, Yang X, Shen Y
Nat Commun (2023) 14 pp. 4713-4713 [ Pubmed: 37543649 DOI: doi:10.1038/s41467-023-40516-2 ]
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Magnesium transporter mrs2 homolog, mitochondrial (51 kDa, Protein from Homo sapiens)
- Human mrs2 (250 kDa, Complex from Homo sapiens)
Cryo-EM structure of hMRS2-rest
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ip6
Q-score: 0.496
Li M, Li Y, Lu Y, Li J, Lu X, Ren Y, Wen T, Wang Y, Chang S, Zhang X, Yang X, Shen Y
Nat Commun (2023) 14 pp. 4713-4713 [ Pubmed: 37543649 DOI: doi:10.1038/s41467-023-40516-2 ]
- Chloride ion (35 Da, Ligand)
- Magnesium transporter mrs2 homolog, mitochondrial (51 kDa, Protein from Homo sapiens)
- Human mrs2 (Complex from Homo sapiens)
Cryo-EM structure of SoxS-dependent transcription activation complex with micF promoter DNA
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 7w5w
Q-score: 0.332
Shi J, Wang L, Wen A, Wang F, Zhang Y, Yu L, Li F, Jin Y, Feng Z, Li J, Yang Y, Gao F, Zhang Y, Feng Y, Wang S, Zhao W, Lin W
Nucleic Acids Res (2022) 50 pp. 11359-11373 [ Pubmed: 36243985 DOI: doi:10.1093/nar/gkac898 ]
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Regulatory protein soxs (12 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna reverse strand (21 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Micf promoter dna forward strand (21 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Soxs-dependent transcription activation complex with micf promoter dna (Complex from Escherichia coli K-12)
- Dna (Complex)
- Dna-directed rna polymerase subunits (Complex from Escherichia coli)
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation
Resolution: 4.57 Å
EM Method: Single-particle
Fitted PDBs: 7vwy
Q-score: 0.359
Shi J, Wang F, Li F, Wang L, Xiong Y, Wen A, Jin Y, Jin S, Gao F, Feng Z, Li J, Zhang Y, Shang Z, Wang S, Feng Y, Lin W
Nucleic Acids Res (2022) 50 pp. 5974-5987 [ Pubmed: 35641097 DOI: doi:10.1093/nar/gkac433 ]
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna scaffold forward strand (21 kDa, DNA from Escherichia coli)
- Right origin-binding protein (33 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Rob-dependent transcription activation complex (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna scaffold reverse strand (21 kDa, DNA from Escherichia coli)
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7vwz
Q-score: 0.345
Shi J, Wang F, Li F, Wang L, Xiong Y, Wen A, Jin Y, Jin S, Gao F, Feng Z, Li J, Zhang Y, Shang Z, Wang S, Feng Y, Lin W
Nucleic Acids Res (2022) 50 pp. 5974-5987 [ Pubmed: 35641097 DOI: doi:10.1093/nar/gkac433 ]
- Rna polymerase subunits (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna reverse strand (21 kDa, DNA from Escherichia coli)
- Right origin-binding protein (33 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Micf promoter dna forward strand (21 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Rob-dependent transcription activation complex (Complex from Escherichia coli K-12)
- Dna (Complex)