Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7wp8
Q-score: 0.441
Wu Y, Wang S, Zhang Y, Yuan L, Zheng Q, Wei M, Shi Y, Wang Z, Ma J, Wang K, Nie M, Xiao J, Huang Z, Chen P, Guo H, Lan M, Xu J, Hou W, Hong Y, Chen D, Sun H, Xiong H, Zhou M, Liu C, Guo W, Guo H, Gao J, Gan C, Li Z, Zhang H, Wang X, Li S, Cheng T, Zhao Q, Chen Y, Wu T, Zhang T, Zhang J, Cao H, Zhu H, Yuan Q, Guan Y, Xia N
Cell Host Microbe (2022) 30 pp. 1732-1744.e7 [ Pubmed: 36323313 DOI: doi:10.1016/j.chom.2022.10.011 ]
- 85f7 light chain (11 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 85f7 heavy chain (13 kDa, Protein from Mus musculus)
- Neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of sars-cov-2 recombinant spike protein stfk1628x in complex with three neutralizing antibodies (Complex from Mus musculus)
- Spike protein stfk1628x (Complex)
- 83h7 light chain (11 kDa, Protein from Mus musculus)
- 2b4 light chain (12 kDa, Protein from Mus musculus)
- 83h7 heavy chain (13 kDa, Protein from Mus musculus)
- Spike glycoprotein (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2b4 heavy chain (13 kDa, Protein from Mus musculus)
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 7wp6
Q-score: 0.438
Wu Y, Wang S, Zhang Y, Yuan L, Zheng Q, Wei M, Shi Y, Wang Z, Ma J, Wang K, Nie M, Xiao J, Huang Z, Chen P, Guo H, Lan M, Xu J, Hou W, Hong Y, Chen D, Sun H, Xiong H, Zhou M, Liu C, Guo W, Guo H, Gao J, Gan C, Li Z, Zhang H, Wang X, Li S, Cheng T, Zhao Q, Chen Y, Wu T, Zhang T, Zhang J, Cao H, Zhu H, Yuan Q, Guan Y, Xia N
Cell Host Microbe (2022) 30 pp. 1732-1744.e7 [ Pubmed: 36323313 DOI: doi:10.1016/j.chom.2022.10.011 ]
- 85f7 light chain (11 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 85f7 heavy chain (13 kDa, Protein from Mus musculus)
- Neutralizing antibodies (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein stfk (Complex)
- 83h7 light chain (11 kDa, Protein from Mus musculus)
- 83h7 heavy chain (13 kDa, Protein from Mus musculus)
- 36h6 light chain (12 kDa, Protein from Mus musculus)
- 36h6 heavy chain (13 kDa, Protein from Mus musculus)
- Cryo-em structure of sars-cov-2 recombinant spike protein stfk in complex with three neutralizing antibodies (Complex from Mus musculus)
Cryo-EM structures of Alphacoronavirus spike glycoprotein
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7cyc
Q-score: 0.424
Song X, Shi Y, Ding W, Niu T, Sun L, Tan Y, Chen Y, Shi J, Xiong Q, Huang X, Xiao S, Zhu Y, Cheng C, Fu ZF, Liu ZJ, Peng G
Nat Commun (2021) 12 pp. 141-141 [ DOI: doi:10.1038/s41467-020-20401-y Pubmed: 33420048 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hcov-229e spike trimer (Complex from Human coronavirus 229E)
- Spike glycoprotein (122 kDa, Protein from Human coronavirus 229E)
Cryo-EM structures of Alphacoronavirus spike glycoprotein
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 7cyd
Q-score: 0.361
Song X, Shi Y, Ding W, Niu T, Sun L, Tan Y, Chen Y, Shi J, Xiong Q, Huang X, Xiao S, Zhu Y, Cheng C, Fu ZF, Liu ZJ, Peng G
Nat Commun (2021) 12 pp. 141-141 [ DOI: doi:10.1038/s41467-020-20401-y Pubmed: 33420048 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hcov-229e spike trimer (Complex from Human coronavirus 229E)
- Spike glycoprotein (122 kDa, Protein from Human coronavirus 229E)
structure of influenza D virus apo polymerase
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6kv5
Q-score: 0.213
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Polymerase 3 (83 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Influenza d virus polymerase (270 kDa, Complex from Thogotovirus)
- Polymerase pb2 (88 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6kuk
Q-score: 0.403
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Polymerase 3 (83 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*cp*up*cp*cp*up*gp*cp*up*up*ap*up*gp*cp*u)-3') (4 kDa, RNA from synthetic construct)
- Polymerase pb2 (88 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*ap*gp*cp*ap*gp*up*ap*gp*cp*ap*ap*gp*gp*ap*g)-3') (4 kDa, RNA from synthetic construct)
- Influenza d virus polymerase bound to vrna promoter (290 kDa, Complex from Influenza D virus)
Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6kup
Q-score: 0.326
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus)
- Influenza d virus polymerase (270 kDa, Complex from Influenza D virus)
- Polymerase 3 (83 kDa, Protein from Influenza D virus)
- Rna (5'-r(p*cp*up*cp*cp*up*gp*cp*up*up*ap*up*gp*cp*u)-3') (4 kDa, RNA from synthetic construct)
- Polymerase pb2 (88 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*ap*gp*cp*ap*gp*up*ap*gp*cp*ap*ap*gp*gp*ap*g)-3') (4 kDa, RNA from synthetic construct)
structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B2)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6kut
Q-score: 0.358
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus)
- Polymerase 3 (83 kDa, Protein from Influenza D virus)
- Rna (5'-r(p*cp*up*cp*cp*up*gp*cp*up*up*ap*up*gp*cp*u)-3') (4 kDa, RNA from synthetic construct)
- Polymerase pb2 (88 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*ap*gp*cp*ap*gp*up*ap*gp*cp*ap*ap*gp*gp*ap*g)-3') (4 kDa, RNA from synthetic construct)
- Influenza d virus polymerase bound to vrna promoter in mode b conformation (class b2) (270 kDa, Complex from Thogotovirus)
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6kur
Q-score: 0.42
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Influenza d virus polymerase bound to vrna promoter (270 kDa, Complex from Influenza D virus)
- Polymerase 3 (83 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Polymerase pb2 (29 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*cp*up*cp*cp*up*gp*cp*up*up*ap*up*gp*cp*u)-3') (4 kDa, RNA from synthetic construct)
- Rna (5'-r(p*ap*gp*cp*ap*gp*up*ap*gp*cp*ap*ap*gp*gp*ap*g)-3') (4 kDa, RNA from synthetic construct)
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) 4 pp. 1750-1759 [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Polymerase pb2 (29 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Rna (5'-r(p*cp*up*cp*cp*up*gp*cp*up*up*ap*up*gp*cp*u)-3') (4 kDa, RNA from synthetic construct)
- Polymerase 3 (83 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Influenza d virus polymerase boud to vrna promoter (270 kDa, Complex from Influenza D virus)
- Rna (5'-r(p*ap*gp*cp*ap*gp*up*ap*gp*cp*ap*ap*gp*gp*ap*g)-3') (4 kDa, RNA from synthetic construct)