Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7e1z
Q-score: 0.479
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state (Complex from Homo sapiens)
- Water (18 Da, Ligand)
Cryo EM structure of a K+-bound Na+,K+-ATPase in the E2 state
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7e20
Q-score: 0.563
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Cryo em structure of a k+-bound na+,k+-atpase in the e2 state (Complex from Homo sapiens)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Water (18 Da, Ligand)
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state with ATP-gamma-S
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7e21
Q-score: 0.535
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ DOI: doi:10.1038/s41467-022-31602-y Pubmed: 35803952 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state with atp-gamma-s (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Water (18 Da, Ligand)
Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 6li9
Q-score: 0.545
Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q
Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]
- B(0,+)-type amino acid transporter 1 (55 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- B0,+at-rbat complex bound with arginine (120 kDa, Complex from Homo sapiens)
- Arginine (175 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Neutral and basic amino acid transport protein rbat (80 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Heteromeric amino acid transporter b0,+AT-rBAT complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6lid
Q-score: 0.524
Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q
Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]
- B(0,+)-type amino acid transporter 1 (55 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Neutral and basic amino acid transport protein rbat (80 kDa, Protein from Homo sapiens)
- B0,+at-rbat complex (120 kDa, Complex from Homo sapiens)
- Water (18 Da, Ligand)
cryo EM map of b0,+AT-rBAT complex, focused refined on soluble domain
Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q
Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]
- Rbat (Protein from Homo sapiens)
- B0,+at-rbat complex (120 kDa, Complex from Homo sapiens)
- B0,+at (Protein from Homo sapiens)
Cryo EM map of b0,+AT-rBAT complex bound with Arginine, focused refined on soluble domain
Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q
Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]
- B0,+at (Protein from Homo sapiens)
- Rbat (Protein from Homo sapiens)
- B0,+at-rbat complex bound with arginine, focused refined on soluble domain (120 kDa, Complex from Homo sapiens)
Cryo EM map of b0,+ AT-rBAT complex bound with Arginine, focused refined on TM domain
Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q
Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]
- B0,+at (Protein from Homo sapiens)
- Rbat (Protein from Homo sapiens)
- B0,+at-rbat complex bound with arginine, focused refined on tm domain (120 kDa, Complex from Homo sapiens)