Electron Microscopy Data Bank

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Cryo-EM structure of human SARM1 TIR domain in complex with 1AD

Release date: May 11, 2022
Resolution: 8.5 Å
EM Method: Single-particle

Shi Y, Kerry PS, Nanson JD, Bosanac T, Sasaki Y, Krauss R, Saikot FK, Adams SE, Mosaiab T, Masic V, Mao X, Rose F, Vasquez E, Furrer M, Cunnea K, Brearley A, Gu W, Luo Z, Brillault L, Landsberg MJ, DiAntonio A, Kobe B, Milbrandt J, Hughes RO, Ve T

Mol Cell (2022) 82 pp. 1643-1659.e10 [ DOI: doi:10.1016/j.molcel.2022.03.007 Pubmed: 35334231 ]

Sample:

EMD-24231

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Double nuclear outer ring from the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 11.6 Å
EM Method: Single-particle
Fitted PDBs: 7n84
Q-score: 0.063

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Unknown (5 kDa, Protein from Saccharomyces cerevisiae)
Yeast double outer ring (10 MDa, Complex from Saccharomyces cerevisiae)
Nucleoporin nup133 (133 kDa, Protein from Saccharomyces cerevisiae)
Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin 145c (81 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup84 (83 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup120 (120 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup85 (84 kDa, Protein from Saccharomyces cerevisiae)

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EMD-9857

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Cryo-EM structure of Chikungunya VLP in complex with its receptor MXRA8

Release date: May 15, 2019
Resolution: 8.9 Å
EM Method: Single-particle

Song H, Zhao Z, Chai Y, Jin X, Li C, Yuan F, Liu S, Gao Z, Wang H, Song J, Vazquez L, Zhang Y, Tan S, Morel CM, Yan J, Shi Y, Qi J, Gao F, Gao FG

Cell (2019) 177 pp. 1-11 [ DOI: doi:10.1016/j.cell.2019.04.008 ]

Sample:

Chikungunya vlp complexed with its receptor mxra8 (Complex from Chikungunya virus)

EMD-6577

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Cryo-EM map of yeast 26S proteasome in M2 state derived from Arctica dataset

Release date: May 11, 2016
Resolution: 8.3 Å
EM Method: Single-particle

Luan B, Huang X, Wu J, Mei Z, Wang Y, Xue X, Yan C, Wang J, Finley DJ, Shi Y, Wang F

PNAS (2016) 113 pp. 2642-2647 [ DOI: doi:10.1073/pnas.1601561113 Pubmed: 26929360 ]

Sample:

26s proteasome (2 MDa, Protein from Saccharomyces cerevisiae)
Yeast 26s proteasome in m2 state (2 MDa, Sample)

EMD-6579

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Cryo-EM map of yeast 26S proteasome in M2 state with RP mask derived from Arctica dataset

Release date: May 11, 2016
Resolution: 8.7 Å
EM Method: Single-particle

Luan B, Huang X, Wu J, Mei Z, Wang Y, Xue X, Yan C, Wang J, Finley DJ, Shi Y, Wang F

PNAS (2016) 113 pp. 2642-2647 [ DOI: doi:10.1073/pnas.1601561113 Pubmed: 26929360 ]

Sample:

19s rp of proteasome (2 MDa, Protein from Saccharomyces cerevisiae)
Rp of yeast 26s proteasome in m2 state (2 MDa, Sample)

EMD-5607

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Structural dynamics and inter-ring communication of the MecA-ClpC complex during active substrate unfolding and translocation revealed by cryo-EM

Release date: May 15, 2013
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 3j3t
Q-score: 0.077

Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N

J Biol Chem (2013) 288 pp. 17597-17608 [ Pubmed: 23595989 DOI: doi:10.1074/jbc.M113.458752 ]

Sample:

EMD-5608

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Structural dynamics and inter-ring communication of the MecA-ClpC protease complex during active substrate unfolding and translocation revealed by cryo-EM

Release date: May 15, 2013
Resolution: 11.0 Å
EM Method: Single-particle
Fitted PDBs: 3j3s
Q-score: 0.104

Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N

J Biol Chem (2013) 288 pp. 17597-17608 [ Pubmed: 23595989 DOI: doi:10.1074/jbc.M113.458752 ]

Sample:

EMD-5609

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Structural dynamics and inter-ring communication of the MecA-ClpC complex during active substrate unfolding and translocation revealed by cryo-EM

Release date: May 15, 2013
Resolution: 10.0 Å
EM Method: Single-particle
Fitted PDBs: 3j3u
Q-score: 0.086

Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N

J Biol Chem (2013) 288 pp. 17597-17608 [ Pubmed: 23595989 DOI: doi:10.1074/jbc.M113.458752 ]

Sample:

Meca-clpc (e280a,e618a) with atp (600 kDa, Sample)
Clpc (Protein from Bacillus subtilis)
Meca (Protein from Bacillus subtilis)

EMD-5610

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Structural dynamics and inter-ring communication of the MecA-ClpC protease complex during active substrate unfolding and translocation revealed by cryo-EM

Release date: May 15, 2013
Resolution: 9.4 Å
EM Method: Single-particle
Fitted PDBs: 3j3r
Q-score: 0.079

Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N

J Biol Chem (2013) 288 pp. 17597-17608 [ Pubmed: 23595989 DOI: doi:10.1074/jbc.M113.458752 ]

Sample:

Meca-clpc(e280a,e618a)with adp (600 kDa, Sample)
Meca (Protein from Bacillus subtilis)
Clpc (Protein from Bacillus subtilis)

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