Electron Microscopy Data Bank

EMD-0982

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Single particle reconstruction of LR subunit

Release date: Feb. 10, 2021
Resolution: 10.7 Å
EM Method: Single-particle

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) 30 pp. 532-540 [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis complex (Complex from Xenopus laevis)

EMD-0983

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Luminal ring of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 15.1 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) 30 pp. 532-540 [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0984

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Luminal ring bumper-7 conformation of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 16.0 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) 30 pp. 532-540 [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0985

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Luminal ring bumper-6 conformation of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 17.0 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0986

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Cytoplasmic ring of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 9.1 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) 30 pp. 532-540 [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0997

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Inner ring of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 13.1 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) 30 pp. 532-540 [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0998

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Nuclear ring of the Xenopus laevis nuclear pore complex

Release date: May 20, 2020
Resolution: 13.6 Å
EM Method: Subtomogram averaging

Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y

Cell Res (2020) [ Pubmed: 32367042 DOI: doi:10.1038/s41422-020-0320-y ]

Sample:

Xenopus laevis (Cell from Xenopus laevis)

EMD-0903

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Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine

Release date: April 29, 2020
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 6li9
Q-score: 0.545

Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q

Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]

Sample:

B(0,+)-type amino acid transporter 1 (55 kDa, Protein from Homo sapiens)
Calcium ion (40 Da, Ligand)
B0,+at-rbat complex bound with arginine (120 kDa, Complex from Homo sapiens)
Arginine (175 Da, Ligand)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Neutral and basic amino acid transport protein rbat (80 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)

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EMD-0904

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Heteromeric amino acid transporter b0,+AT-rBAT complex

Release date: April 29, 2020
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6lid
Q-score: 0.524

Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q

Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]

Sample:

B(0,+)-type amino acid transporter 1 (55 kDa, Protein from Homo sapiens)
Calcium ion (40 Da, Ligand)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Neutral and basic amino acid transport protein rbat (80 kDa, Protein from Homo sapiens)
B0,+at-rbat complex (120 kDa, Complex from Homo sapiens)
Water (18 Da, Ligand)

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EMD-0905

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cryo EM map of b0,+AT-rBAT complex, focused refined on soluble domain

Release date: April 29, 2020
Resolution: 2.5 Å
EM Method: Single-particle

Yan R, Li Y, Shi Y, Zhou J, Lei J, Huang J, Zhou Q

Sci Adv (2020) 6 pp. eaay6379-eaay6379 [ Pubmed: 32494597 DOI: doi:10.1126/sciadv.aay6379 ]

Sample:

Rbat (Protein from Homo sapiens)
B0,+at-rbat complex (120 kDa, Complex from Homo sapiens)
B0,+at (Protein from Homo sapiens)

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