Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8zre
Q-score: 0.206
Yan H, Liu C, Li Y, Tang S, Guo H, Zhou B, Fan Q, Wang H, Ge X, Wang X, Liao X, Li J, Zhang Z, Ju B
J Virol (2025) 99 pp. e0169424-e0169424 [ DOI: doi:10.1128/jvi.01694-24 Pubmed: 39601613 ]
- Heavy chains of d4 fab (13 kDa, Protein from Homo sapiens)
- Light chains of d4 fab (12 kDa, Protein from Homo sapiens)
- Complex of hbv capsid and d4 fab (Complex from hepatitis B virus genotype C)
- Capsid protein (16 kDa, Protein from hepatitis B virus genotype C)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8zrh
Q-score: 0.265
Yan H, Liu C, Li Y, Tang S, Guo H, Zhou B, Fan Q, Wang H, Ge X, Wang X, Liao X, Li J, Zhang Z, Ju B
J Virol (2025) 99 pp. e0169424-e0169424 [ DOI: doi:10.1128/jvi.01694-24 Pubmed: 39601613 ]
- Heavy chains of d4 fab (13 kDa, Protein from Homo sapiens)
- Light chains of d4 fab (12 kDa, Protein from Homo sapiens)
- Asymmetric unit of the complex between hbv capsid and d4 fab (Complex from Homo sapiens)
- Capsid protein (16 kDa, Protein from hepatitis B virus genotype C)
Dimer-AB and Fab-hl complex of HBcAg
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 8zrr
Q-score: 0.299
Yan H, Liu C, Li Y, Tang S, Guo H, Zhou B, Fan Q, Wang H, Ge X, Wang X, Liao X, Li J, Zhang Z, Ju B
J Virol (2025) 99 pp. e0169424-e0169424 [ DOI: doi:10.1128/jvi.01694-24 Pubmed: 39601613 ]
- Heacy chain of d4 fab (13 kDa, Protein from Homo sapiens)
- Dimer-ab and fab-hl from hbcag-d4 fab complex (Complex from Homo sapiens)
- Light chain of d4 fab (12 kDa, Protein from Homo sapiens)
- Capsid protein (16 kDa, Protein from hepatitis B virus genotype C)
Cryo-EM structure of alpha-synuclein gS87 fibril
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 8jex
Q-score: 0.537
Hu J, Xia W, Zeng S, Lim YJ, Tao Y, Sun Y, Zhao L, Wang H, Le W, Li D, Zhang S, Liu C, Li YM
Nat Commun (2024) 15 pp. 2677-2677 [ DOI: doi:10.1038/s41467-024-46898-1 Pubmed: 38538591 ]
- Alpha-synuclein (14 kDa, Protein from Homo sapiens)
- Unverified amino acid chain (783 Da, Protein from Homo sapiens)
- Cryo-em structure of alpha-synuclein gs87 fibril (Cellular component from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of alpha-synuclein pS87 fibril
Resolution: 2.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8jey
Q-score: 0.587
Cryo-EM structure of amyloid fibril formed by human RIPK3
Resolution: 4.24 Å
EM Method: Helical reconstruction
Fitted PDBs: 7da4
Q-score: 0.353
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7dcc
Q-score: 0.137
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- Complex of sarc-cov2-s protein with 3c1 fab, all the three rbds are in the up conformation and each of them associates with a 3c1 fab (Complex from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sarc-cov2-s protein (Complex)
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7dcx
Q-score: 0.087
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- Sars-cov2-s protein (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down (Complex from Mus musculus)
- The heavy chain of 3c1 fab that binds with the up rbd (24 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
S-3C1-F2 structure, two RBDs are up and one RBD is down, the two up RBD bind with a 3C1 fab.
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7dd2
Q-score: 0.1
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- Sars-cov2-s protein (Complex from Mus musculus)
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down, only the two up rbds bind with a 3c1 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
S-3C1-F1 structure, one RBD is up and two RBDs are down, the up RBD binds with a 3C1 fab
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 7dd8
Q-score: 0.081
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2-s protein (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, one rbd is up and two rbds are down, the up rbd binds with a 3c1 fab (Complex from Mus musculus)
- The light chain of 3c1 chain (23 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)