Rosellinia necatrix megabirnavirus 1-W779 full capsid
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8b4z
Q-score: 0.597
Wang H, Salaipeth L, Miyazaki N, Suzuki N, Okamoto K
PLoS Pathog (2023) 19 pp. e1011162-e1011162 [ DOI: doi:10.1371/journal.ppat.1011162 Pubmed: 36848381 ]
Rosellinia necatrix megabirnavirus 1-W779 empty capsid
Wang H, Salaipeth L, Miyazaki N, Suzuki N, Okamoto K
PLoS Pathog (2023) 19 pp. e1011162-e1011162 [ DOI: doi:10.1371/journal.ppat.1011162 Pubmed: 36848381 ]
Rosellinia necatrix megabirnavirus 1-W779 full capsid with Crown protein
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8b59
Q-score: 0.529
Wang H, Salaipeth L, Miyazaki N, Suzuki N, Okamoto K
PLoS Pathog (2023) 19 pp. e1011162-e1011162 [ DOI: doi:10.1371/journal.ppat.1011162 Pubmed: 36848381 ]
Modified BG505 SOSIP-based immunogen RC1 in complex with elicited mAb Ab283MUR Fab and 8ANC195 Fab
Escolano A, Gristick HB, Gautam R, DeLaitsch AT, Abernathy ME, Yang Z, Wang H, Hoffmann MAG, Nishimura Y, Wang Z, Koranda N, Kakutani LM, Gao H, Gnanapragasam PNP, Raina H, Gazumyan A, Cipolla M, Oliveira TY, Ramos V, Irvine DJ, Silva M, West Jr AP, Keeffe JR, Barnes CO, Seaman MS, Nussenzweig MC, Martin MA, Bjorkman PJ
Sci Transl Med (2021) 13 pp. eabk1533-eabk1533 [ DOI: doi:10.1126/scitranslmed.abk1533 Pubmed: 34818054 ]
- Elicited ab283mur fab in complex with rc1 sosip and bnab 8anc195 fab (600 kDa, Complex)
- 8anc195 fab (Complex from Homo sapiens)
- Rc1 sosip (Complex from Human immunodeficiency virus 1)
- Ab283mur fab (Complex from Mus musculus)
Resolution: 5.91 Å
EM Method: Single-particle
Fitted PDBs: 6tmw
Q-score: 0.173
Bracher A, Paul SS, Wang H, Wischnewski N, Hartl FU, Hayer-Hartl M
PLoS One (2020) 15 pp. e0230090-e0230090 [ Pubmed: 32339190 DOI: doi:10.1371/journal.pone.0230090 ]
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 6tmx
Q-score: 0.163
Bracher A, Paul SS, Wang H, Wischnewski N, Hartl FU, Hayer-Hartl M
PLoS One (2020) 15 pp. e0230090-e0230090 [ Pubmed: 32339190 DOI: doi:10.1371/journal.pone.0230090 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Putative groel-like chaperonine protein (61 kDa, Protein from Pseudomonas phage EL)
- Potassium ion (39 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The chaperonin gp146 from the bacteriophage el (pseudomonas aeruginosa) in complex with atpgammas (864 kDa, Complex from Pseudomonas phage EL)
Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch bNAb 10-1074
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 6orn
Q-score: 0.423
Escolano A, Gristick HB, Abernathy ME, Merkenschlager J, Gautam R, Oliveira TY, Pai J, West Jr AP, Barnes CO, Cohen AA, Wang H, Golijanin J, Yost D, Keeffe JR, Wang Z, Zhao P, Yao KH, Bauer J, Nogueira L, Gao H, Voll AV, Montefiori DC, Seaman MS, Gazumyan A, Silva M, McGuire AT, Stamatatos L, Irvine DJ, Wells L, Martin MA, Bjorkman PJ, Nussenzweig MC
Nature (2019) 570 pp. 468-473 [ DOI: doi:10.1038/s41586-019-1250-z Pubmed: 31142836 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rc1 variant of hiv-1 env glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 10-1074 antibody fab light chain (23 kDa, Protein from Homo sapiens)
- 10-1074 fab (Complex from Homo sapiens)
- Rc1 variant of bg505 sosip.664 trimer (Complex from Human immunodeficiency virus 1)
- Complex of rc1 variant of bg505 sosip.664 trimer with three 10-1074 fabs and three cd4bs fabs (600 kDa, Complex from Human immunodeficiency virus 1)
- 10-1074 antibody fab heavy chain (25 kDa, Protein from Homo sapiens)
- Rc1 variant of hiv-1 env glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6oro
Q-score: 0.465
Escolano A, Gristick HB, Abernathy ME, Merkenschlager J, Gautam R, Oliveira TY, Pai J, West Jr AP, Barnes CO, Cohen AA, Wang H, Golijanin J, Yost D, Keeffe JR, Wang Z, Zhao P, Yao KH, Bauer J, Nogueira L, Gao H, Voll AV, Montefiori DC, Seaman MS, Gazumyan A, Silva M, McGuire AT, Stamatatos L, Irvine DJ, Wells L, Martin MA, Bjorkman PJ, Nussenzweig MC
Nature (2019) 570 pp. 468-473 [ DOI: doi:10.1038/s41586-019-1250-z Pubmed: 31142836 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rc1 variant of hiv-1 env glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Complex of rc1 variant of bg505 sosip.664 trimer with three elicted ab874nhp fabs and three human bnab 8anc195 fabs (150 kDa, Complex from Human immunodeficiency virus 1)
- Ab874nhp antibody fab heavy chain (26 kDa, Protein from Macaca mulatta)
- Rc1 variant of bg505 sosip.664 trimer (Complex from Human immunodeficiency virus 1)
- Ab874nhp fab (Complex from Macaca mulatta)
- Rc1 variant of hiv-1 env glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
- Ab874nhp antibody fab light chain (24 kDa, Protein from Macaca mulatta)