negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195
Resolution: 16.8 Å
EM Method: Single-particle
Fitted PDBs: 5a7x
Q-score: 0.065
Scharf L, Wang H, Gao H, Chen S, McDowall A, Bjorkman P
Cell (2015) 162 pp. 1379-1390 [ DOI: doi:10.1016/J.CELL.2015.08.035 Pubmed: 26359989 ]
- Soluble hiv-1 env trimer bg505 sosip.664 (420 kDa, Protein from Human immunodeficiency virus 1)
- Soluble cd4 (d1-d2 domains) (20 kDa, Protein from Homo sapiens)
- Fab of broadly neutralizing antibody 17b (50 kDa, Protein from Homo sapiens)
- Fab of broadly neutralizing antibody 8anc195 variant g52k5 (50 kDa, Protein from Homo sapiens)
- Soluble hiv-1 env trimer bg505 sosip.664 in complex with soluble cd4s (d1-d2), broadly neutralizing antibody 17b fabs, and broadly neutralizing antibody 8anc195 variant g32k5 fabs (500 kDa, Sample)
cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195
Resolution: 23.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 5a8h
Q-score: 0.06
Scharf L, Wang H, Gao H, Chen S, McDowall A, Bjorkman P
Cell (2015) 162 pp. 1379-1390 [ DOI: doi:10.1016/j.cell.2015.08.035 Pubmed: 26359989 ]
- Soluble hiv-1 env trimer bg505 sosip.664 (420 kDa, Protein from Human immunodeficiency virus 1)
- Soluble cd4 (d1-d2 domains) (20 kDa, Protein from Homo sapiens)
- Fab of broadly neutralizing antibody 17b (50 kDa, Protein from Homo sapiens)
- Fab of broadly neutralizing antibody 8anc195 variant g52k5 (50 kDa, Protein from Homo sapiens)
- Soluble hiv-1 env trimer bg505 sosip.664 in complex with soluble cd4s (d1-d2), broadly neutralizing antibody 17b fabs, and broadly neutralizing antibody 8anc195 variant g32k5 fabs (500 kDa, Sample)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Hdv-re (350 kDa, Sample)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rna08 (2 kDa, RNA from synthetic construct)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna08 (350 kDa, Sample)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rrp44-exosome incubated with rna10 (350 kDa, Sample)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rna10 (2 kDa, RNA from synthetic construct)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rna12 (3 kDa, RNA from synthetic construct)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna12 (350 kDa, Sample)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rna14 (3 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna14 (350 kDa, Sample)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rna16 (4 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna16 (350 kDa, Sample)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna24 (350 kDa, Sample)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rna24 (7 kDa, RNA from synthetic construct)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rna36 (10 kDa, RNA from synthetic construct)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna36 (350 kDa, Sample)