Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8gk7
Q-score: 0.364
Wang H, Ishchenko A, Skudlarek J, Shen P, Dzhekieva L, Painter RE, Chen YT, Bukhtiyarova M, Leithead A, Tracy R, Babaoglu K, Bahnck-Teets C, Buevich A, Cabalu TD, Labroli M, Lange H, Lei Y, Li W, Liu J, Mann PA, Meng T, Mitchell HJ, Mulhearn J, Scapin G, Sha D, Shaw AW, Si Q, Tong L, Wu C, Wu Z, Xiao JC, Xu M, Zhang LK, McKenney D, Miller RR, Black TA, Cooke A, Balibar CJ, Klein DJ, Raheem I, Walker SS
Nat Microbiol (2024) 9 pp. 1244-1255 [ DOI: doi:10.1038/s41564-024-01667-0 Pubmed: 38649414 ]
- 2-[(4-butylbenzene-1-sulfonyl)amino]-5-[(3-{4-[(4-butylbenzene-1-sulfonyl)amino]-3-carboxyanilino}-3-oxopropyl)carbamoyl]benzoic acid (778 Da, Ligand)
- Msba complexed with cerastecin c (450 kDa, Complex from Acinetobacter baumannii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Lipid a export atp-binding/permease protein msba (66 kDa, Protein from Acinetobacter baumannii)
Structure of the type III-E CRISPR-Cas effector gRAMP
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xso
Q-score: 0.553
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Gramp (Complex from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
the cryo-EM structure of human mini-SNAPc in complex with hU6-1 PSE
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7xur
Q-score: 0.474
Sun J, Li X, Hou X, Cao S, Cao W, Zhang Y, Song J, Wang M, Wang H, Yan X, Li Z, Roeder RG, Wang W
Nat Commun (2022) 13 pp. 6871-6871 [ DOI: doi:10.1038/s41467-022-34639-1 Pubmed: 36369505 ]
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- Human mini-snapc (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 4 (60 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Snrna-activating protein complex subunit 1 (33 kDa, Protein from Homo sapiens)
- Dna (Complex)
- The complex of human mini-snapc with hu6-1 pse (Complex)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7xsp
Q-score: 0.554
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-target rna (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7xsq
Q-score: 0.496
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Craspase (Complex from Candidatus Scalindua brodae)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Rna (Complex)
- Ramp superfamily protein, chat domain protein (Complex from Candidatus Scalindua brodae)
Structure of Craspase-target RNA
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7xsr
Q-score: 0.52
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Rna (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Craspase-target rna (Complex from Candidatus Scalindua brodae)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xss
Q-score: 0.465
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Craspase-ctr complex (Complex from Candidatus Scalindua brodae)
- Chat domain protein (Complex from Candidatus Scalindua brodae)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Rna (Complex)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xt4
Q-score: 0.536
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Craspase-ntr complex (Complex from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*ap*cp*cp*g)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (34-mer) (17 kDa, RNA from Candidatus Scalindua brodae)
- Rna (34-mer) (Complex)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7yhk
Q-score: 0.556
Li T, Chen J, Zheng Q, Xue W, Zhang L, Rong R, Zhang S, Wang Q, Hong M, Zhang Y, Cui L, He M, Lu Z, Zhang Z, Chi X, Li J, Huang Y, Wang H, Tang J, Ying D, Zhou L, Wang Y, Yu H, Zhang J, Gu Y, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 5182-5182 [ Pubmed: 36056024 DOI: doi:10.1038/s41467-022-32926-5 ]
- Neutralizing antibody 12h5 (Complex from Mus musculus)
- Hemagglutinin (62 kDa, Protein from Influenza A virus (A/Beijing/262/1995(H1N1)))
- Ha trimer of a/beijing/262/1995(h1n1) (Complex from Influenza A virus (A/Beijing/262/1995(H1N1)))
- 12h5 heavy chain (12 kDa, Protein from Mus musculus)
- 12h5 light chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of the ha trimer of a/beijing/262/1995(h1n1) in complex with neutralizing antibody 12h5 (Complex)
DNA-PK complex of DNA end processing
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7sgl
Q-score: 0.445
Liu L, Chen X, Li J, Wang H, Buehl CJ, Goff NJ, Meek K, Yang W, Gellert M
Mol Cell (2022) 82 pp. 177- [ Pubmed: 34936881 DOI: doi:10.1016/j.molcel.2021.11.025 ]
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Complex of dna-pkcs, ku70, ku80, artemis and dna (720 kDa, Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Hairpin_1 (16 kDa, DNA from synthetic construct)
- Inositol hexakisphosphate (660 Da, Ligand)
- X-ray repair cross-complementing protein 6 (70 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Protein artemis (79 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)