Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9j1k
Q-score: 0.515
Nat Commun (2025) 16 pp. 1695- [ DOI: doi:10.1038/s41467-025-57075-3 ]
- Ftbj (65 kDa, Protein from Listeria monocytogenes)
- Aa protein (18 kDa, Protein from Listeria monocytogenes)
- Monocin (Complex from Listeria monocytogenes)
- Ftbk (31 kDa, Protein from Listeria monocytogenes)
- Ftbl (43 kDa, Protein from Listeria monocytogenes)
- Cca-adding enzyme (10 kDa, Protein from Listeria monocytogenes)
Semliki Forest virus viron in complex with VLDLR
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8yw2
Q-score: 0.467
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (17 kDa, Protein from Homo sapiens)
- Semliki forest viron (Complex from Semliki Forest virus 4)
SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, head-to-head aggregate
Yan Q, Gao X, Liu B, Hou R, He P, Ma Y, Zhang Y, Zhang Y, Li Z, Chen Q, Wang J, Huang X, Liang H, Zheng H, Yao Y, Chen X, Niu X, He J, Chen L, Zhao J, Xiong X
Nat Commun (2024) 15 pp. 7585-7585 [ DOI: doi:10.1038/s41467-024-51770-3 Pubmed: 39217172 ]
- Light chain of r1-26 fab (25 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike trimer (6p) in complex with r1-26 fab, head-to-head aggregate (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of r1-26 fab (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin,expression tag (141 kDa, Protein from synthetic construct)
- Sars-cov-2 spike trimer (6p) (Complex from Severe acute respiratory syndrome coronavirus 2)
- R1-26 fab (Complex from Homo sapiens)
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C1 symmetry)
Yan Q, Gao X, Liu B, Hou R, He P, Ma Y, Zhang Y, Zhang Y, Li Z, Chen Q, Wang J, Huang X, Liang H, Zheng H, Yao Y, Chen X, Niu X, He J, Chen L, Zhao J, Xiong X
Nat Commun (2024) 15 pp. 7585-7585 [ DOI: doi:10.1038/s41467-024-51770-3 Pubmed: 39217172 ]
- Heavy chain of h18 fab (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of h18 fab (25 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike trimer (6p) in complex with three h18 fabs, head-to-head aggregate (c1 symmetry) (Complex from Severe acute respiratory syndrome coronavirus 2)
- H18 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin,expression tag (141 kDa, Protein from synthetic construct)
- Sars-cov-2 spike trimer (6p) (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C3 symmetry)
Yan Q, Gao X, Liu B, Hou R, He P, Ma Y, Zhang Y, Zhang Y, Li Z, Chen Q, Wang J, Huang X, Liang H, Zheng H, Yao Y, Chen X, Niu X, He J, Chen L, Zhao J, Xiong X
Nat Commun (2024) 15 pp. 7585-7585 [ DOI: doi:10.1038/s41467-024-51770-3 Pubmed: 39217172 ]
- Heavy chain of h18 fab (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of h18 fab (25 kDa, Protein from Homo sapiens)
- H18 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin,expression tag (141 kDa, Protein from synthetic construct)
- Sars-cov-2 spike trimer (6p) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike trimer (6p) in complex with three h18 fabs, head-to-head aggregate (c3 symmetry) (Complex from Severe acute respiratory syndrome coronavirus 2)
Prohead portal vertex of bacteriophage lambda
Resolution: 5.58 Å
EM Method: Single-particle
Fitted PDBs: 8xou
Q-score: 0.152
J Virol (2024) 98 pp. e0006824-e0006824 [ Pubmed: 38661364 DOI: doi:10.1128/jvi.00068-24 ]
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
Mature virion portal of phage lambda with DNA
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8xpm
Q-score: 0.31
J Virol (2024) 98 pp. e0006824-e0006824 [ Pubmed: 38661364 DOI: doi:10.1128/jvi.00068-24 ]
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Dna (104-mer) (32 kDa, DNA from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
- Dna (92-mer) (28 kDa, DNA from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
Mature virion portal vertex of bacteriophage lambda
Resolution: 4.07 Å
EM Method: Single-particle
Fitted PDBs: 8xqb
Q-score: 0.334
J Virol (2024) 98 pp. e0006824-e0006824 [ Pubmed: 38661364 DOI: doi:10.1128/jvi.00068-24 ]
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
- Capsid decoration protein (11 kDa, Protein from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
Tail tip conformation 1 of phage lambda tail
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8iyk
Q-score: 0.483
Wang C, Duan J, Gu Z, Ge X, Zeng J, Wang J
Structure (2024) 32 pp. 35- [ Pubmed: 37918400 DOI: doi:10.1016/j.str.2023.10.006 ]
- Tip attachment protein j (124 kDa, Protein from Escherichia phage lambda)
- Tail tip protein m (12 kDa, Protein from Escherichia phage lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage lambda)
- Iron/sulfur cluster (351 Da, Ligand)
- Tail tip assembly protein i (23 kDa, Protein from Escherichia phage lambda)
- Tail tip protein l (25 kDa, Protein from Escherichia phage lambda)
- Tape measure protein (92 kDa, Protein from Escherichia phage lambda)
- Tail tip conformation 1 of phage lambda tail (Complex from Escherichia phage Lambda)
Tail tip conformation 2 of phage lambda tail
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8iyl
Q-score: 0.474
Wang C, Duan J, Gu Z, Ge X, Zeng J, Wang J
Structure (2024) 32 pp. 35- [ Pubmed: 37918400 DOI: doi:10.1016/j.str.2023.10.006 ]
- Tip attachment protein j (124 kDa, Protein from Escherichia phage lambda)
- Tail tip conformation 2 of phage lambda tail (Complex from Escherichia phage lambda)
- Tail tip protein m (12 kDa, Protein from Escherichia phage lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage lambda)
- Iron/sulfur cluster (351 Da, Ligand)
- Tail tip assembly protein i (23 kDa, Protein from Escherichia phage lambda)
- Tail tip protein l (25 kDa, Protein from Escherichia phage lambda)
- Tape measure protein (92 kDa, Protein from Escherichia phage lambda)