The reconstruction of biotin-bound streptavidin at 3.2 Angstrom resolution
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6j6j
Q-score: 0.517
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ DOI: doi:10.1038/s41467-019-10368-w Pubmed: 31160591 ]
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
- Biotin (244 Da, Ligand)
- Water (18 Da, Ligand)
- Streptavidin with biotin (52 kDa, Complex from Streptomyces avidinii)
The reconstruction of apo-state streptavidin at 3.3 Angstrom resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6j6k
Q-score: 0.497
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ DOI: doi:10.1038/s41467-019-10368-w Pubmed: 31160591 ]
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
- Streptavidin (52 kDa, Complex from Streptomyces avidinii)
Structure of 2:1 human Ptch1-Shh-N complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6e1h
Q-score: 0.394
Qi X, Schmiege P, Coutavas E, Li X
Science (2018) 362 [ Pubmed: 30139912 DOI: doi:10.1126/science.aas8843 ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Ptc (265 kDa, Complex from Homo sapiens)
- Protein patched homolog 1 (160 kDa, Protein from Homo sapiens)
- Sonic hedgehog protein (19 kDa, Protein from Homo sapiens)
Yeast nucleolar pre-60S ribosomal subunit (state 2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6c0f
Q-score: 0.339
Sanghai ZA, Miller L, Molloy KR, Barandun J, Hunziker M, Chaker-Margot M, Wang J, Chait BT, Klinge S
Nature (2018) 556 pp. 126-129 [ DOI: doi:10.1038/nature26156 Pubmed: 29512650 ]
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosomal rna-processing protein 14 (50 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosomal rna-processing protein 15 (28 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Yeast large subunit processome (Complex from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Protein mak11 (24 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein erb1 (89 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Brx1-associated peptide (2 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrna-processing protein ebp2 (6 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Zinc ion (65 Da, Ligand)
- Saccharomyces cerevisiae s288c 35s pre-ribosomal rna miscrna (1 MDa, RNA from Saccharomyces cerevisiae BY4741)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Ribosome biogenesis protein ssf1 (51 kDa, Protein from Saccharomyces cerevisiae BY4741)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5xlo
Q-score: 0.337
Peng R, Xu Y, Zhu T, Li N, Qi J, Chai Y, Wu M, Zhang X, Shi Y, Wang P, Wang J, Gao N, Gao GF
Cell Res (2017) 27 pp. 853-864 [ DOI: doi:10.1038/cr.2017.79 Pubmed: 28574055 ]
- Anti-crispr proteins acrf1/2 bound to csy surveillance complex with a 32nt spacer crrna backbone region (400 kDa, Complex from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crrna with 20nt spacer sequence (Complex)
- Uncharacterized protein acrf1 (8 kDa, Protein from Pseudomonas phage JBD30)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Acrf1 (Complex)
- Crrna with 32nt spacer sequence (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (Complex)
VipA-N3, non-contractile sheath of the type VI secretion system
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 5mxn, 5ojq
Wang J, Brackmann M, Castano-Diez D, Kudryashev M, Goldie KN, Maier T, Stahlberg H, Basler M
Nat Microbiol (2017) 2 pp. 1507-1512 [ Pubmed: 28947741 DOI: doi:10.1038/s41564-017-0020-7 ]