Sarbecovirus BM48-31 Spike Trimer in a Locked Conformation
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zy1
Q-score: 0.557
To Be Published
- Linoleic acid (280 Da, Ligand)
- The spike protein of sarbecovirus bm48-31 (420 kDa, Cellular component from BM48-31)
- Spike glycoprotein (140 kDa, Protein from Bat coronavirus BM48-31/BGR/2008)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Sarbecovirus BANAL-20-52 Spike Trimer in a Locked Conformation
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8zy2
Q-score: 0.531
To Be Published
- Bat coronavirus banal-20-52 (420 kDa, Cellular component from BANAL-20-52)
- Biliverdine ix alpha (582 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (125 kDa, Protein from Sarbecovirus)
- Linoleic acid (280 Da, Ligand)
Cryo-EM structure of human CMKLR1-Gi complex bound to chemerin
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8zjg
Q-score: 0.486
Commun Biol (2024) 7 pp. 1598-1598 [ Pubmed: 39616240 DOI: doi:10.1038/s42003-024-07228-9 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Vicugna pacos)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Chemerin-like receptor 1 (42 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Retinoic acid receptor responder protein 2 chemerinv (15 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Human chemerin receptor 1-gi complex bound to chemerin (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Cryo-EM structure of human VMAT2 in complex with serotonin.
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8x3k
Q-score: 0.553
Wei F, Liu H, Zhang W, Wang J, Zhang Y
Nat Commun (2025) 16 pp. 323-323 [ Pubmed: 39747030 DOI: doi:10.1038/s41467-024-55361-0 ]
- Soluble cytochrome b562,synaptic vesicular amine transporter (69 kDa, Protein from Homo sapiens)
- Vmat2 (Complex from Homo sapiens)
- Serotonin (176 Da, Ligand)
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 9dyh
Q-score: 0.476
Owji AP, Dong J, Kittredge A, Wang J, Zhang Y, Yang T
Nat Commun (2024) 15 pp. 10766-10766 [ Pubmed: 39737942 DOI: doi:10.1038/s41467-024-54938-z ]
- Bestrophin-2a (57 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Best2 + glutamate open state (286 kDa, Complex from Homo sapiens)
BEST2 + glutamate closed state
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9dyi
Q-score: 0.555
Owji AP, Dong J, Kittredge A, Wang J, Zhang Y, Yang T
Nat Commun (2024) 15 pp. 10766-10766 [ Pubmed: 39737942 DOI: doi:10.1038/s41467-024-54938-z ]
- Calcium ion (40 Da, Ligand)
- Best2 + glutamate closed state (286 kDa, Complex from Homo sapiens)
- Bestrophin-2a (57 kDa, Protein from Homo sapiens)
- Glutamic acid (147 Da, Ligand)
- Chloride ion (35 Da, Ligand)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 9dyo
Q-score: 0.624
Owji AP, Dong J, Kittredge A, Wang J, Zhang Y, Yang T
Nat Commun (2024) 15 pp. 10766-10766 [ Pubmed: 39737942 DOI: doi:10.1038/s41467-024-54938-z ]
- Best2 + paba closed state (286 kDa, Complex from Homo sapiens)
- Bestrophin-2a (57 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Chloride ion (35 Da, Ligand)
JN.1 RBD with Q493E in complex with ACE2
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9iuu
Q-score: 0.509
Feng L, Sun Z, Zhang Y, Jian F, Yang S, Xia K, Yu L, Wang J, Shao F, Wang X, Cao Y
Cell Discov (2024) 10 pp. 123-123 [ Pubmed: 39616168 DOI: doi:10.1038/s41421-024-00752-2 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Jn.1 rbd q493e (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- Jn.1 rbd with q493e in complex with ace2 (Complex)
- Chloride ion (35 Da, Ligand)
Cryo-EM structure of human VMAT2 in complex with dopamine.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9kqe
Q-score: 0.516
Wei F, Liu H, Zhang W, Wang J, Zhang Y
Nat Commun (2025) 16 pp. 323-323 [ Pubmed: 39747030 DOI: doi:10.1038/s41467-024-55361-0 ]
- Soluble cytochrome b562,synaptic vesicular amine transporter (69 kDa, Protein from Homo sapiens)
- Vmat2 (Complex from Homo sapiens)
- L-dopamine (153 Da, Ligand)
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9dyj
Q-score: 0.684
Owji AP, Dong J, Kittredge A, Wang J, Zhang Y, Yang T
Nat Commun (2024) 15 pp. 10766-10766 [ Pubmed: 39737942 DOI: doi:10.1038/s41467-024-54938-z ]
- Best2 + gaba open state (286 kDa, Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Gamma-amino-butanoic acid (103 Da, Ligand)
- Bestrophin-2a (57 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)